Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG25_RS00730 | Genome accession | NZ_CP094121 |
| Coordinates | 157051..158190 (+) | Length | 379 a.a. |
| NCBI ID | WP_245018818.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe059 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 152051..163190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG25_RS00695 (MPG25_00695) | panD | 152503..152853 (+) | 351 | WP_180580766.1 | aspartate 1-decarboxylase | - |
| MPG25_RS00700 (MPG25_00700) | - | 152864..153157 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG25_RS00705 (MPG25_00705) | - | 153157..154152 (+) | 996 | WP_245019124.1 | PDZ domain-containing protein | - |
| MPG25_RS00710 (MPG25_00710) | comB6 | 154160..155215 (+) | 1056 | WP_245019125.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG25_RS00715 (MPG25_00715) | comB7 | 155231..155356 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG25_RS00720 (MPG25_00720) | comB8 | 155353..156096 (+) | 744 | WP_000660529.1 | virB8 family protein | Machinery gene |
| MPG25_RS00725 (MPG25_00725) | comB9 | 156096..157058 (+) | 963 | WP_245018817.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG25_RS00730 (MPG25_00730) | comB10 | 157051..158190 (+) | 1140 | WP_245018818.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG25_RS00735 (MPG25_00735) | - | 158256..159668 (+) | 1413 | WP_245018819.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG25_RS00740 (MPG25_00740) | gmd | 159682..160827 (+) | 1146 | WP_245018820.1 | GDP-mannose 4,6-dehydratase | - |
| MPG25_RS00745 (MPG25_00745) | - | 160820..161752 (+) | 933 | WP_245018821.1 | GDP-L-fucose synthase | - |
| MPG25_RS00750 (MPG25_00750) | hypE | 162030..163028 (-) | 999 | WP_245018822.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 379 a.a. Molecular weight: 42194.76 Da Isoelectric Point: 9.9312
>NTDB_id=667150 MPG25_RS00730 WP_245018818.1 157051..158190(+) (comB10) [Helicobacter pylori strain Hpfe059]
MNKWIKGALIFVGGFATIITTSLIYHQKPKTPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSSKDATIKALQEQLK
AALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLK
EKDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVW
SRIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQ
LMRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGALIFVGGFATIITTSLIYHQKPKTPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSSKDATIKALQEQLK
AALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLK
EKDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVW
SRIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQ
LMRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1140 bp
>NTDB_id=667150 MPG25_RS00730 WP_245018818.1 157051..158190(+) (comB10) [Helicobacter pylori strain Hpfe059]
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGGGGTTTTGCAACGATTATAACAACCTCTTTAATCTATCACCA
AAAGCCAAAAACCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAA
GCCGCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAA
AGCAAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAAC
AAAGCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAA
GAAAAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCAC
GCCTATTTCTAGCCAGATTGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCT
TAATCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGG
AGTCGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTT
GGTGGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGA
TTGGGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTGTTGCAA
TTGATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGT
GGTGATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCA
TCGCTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGGGGTTTTGCAACGATTATAACAACCTCTTTAATCTATCACCA
AAAGCCAAAAACCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAA
GCCGCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAA
AGCAAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAAC
AAAGCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAA
GAAAAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCAC
GCCTATTTCTAGCCAGATTGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCT
TAATCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGG
AGTCGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTT
GGTGGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGA
TTGGGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTGTTGCAA
TTGATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGT
GGTGATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCA
TCGCTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.459 |
100 |
0.945 |