Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG25_RS00720 Genome accession   NZ_CP094121
Coordinates   155353..156096 (+) Length   247 a.a.
NCBI ID   WP_000660529.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe059     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 150353..161096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG25_RS00695 (MPG25_00695) panD 152503..152853 (+) 351 WP_180580766.1 aspartate 1-decarboxylase -
  MPG25_RS00700 (MPG25_00700) - 152864..153157 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG25_RS00705 (MPG25_00705) - 153157..154152 (+) 996 WP_245019124.1 PDZ domain-containing protein -
  MPG25_RS00710 (MPG25_00710) comB6 154160..155215 (+) 1056 WP_245019125.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG25_RS00715 (MPG25_00715) comB7 155231..155356 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG25_RS00720 (MPG25_00720) comB8 155353..156096 (+) 744 WP_000660529.1 virB8 family protein Machinery gene
  MPG25_RS00725 (MPG25_00725) comB9 156096..157058 (+) 963 WP_245018817.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG25_RS00730 (MPG25_00730) comB10 157051..158190 (+) 1140 WP_245018818.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG25_RS00735 (MPG25_00735) - 158256..159668 (+) 1413 WP_245018819.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG25_RS00740 (MPG25_00740) gmd 159682..160827 (+) 1146 WP_245018820.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28712.97 Da        Isoelectric Point: 8.9546

>NTDB_id=667148 MPG25_RS00720 WP_000660529.1 155353..156096(+) (comB8) [Helicobacter pylori strain Hpfe059]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667148 MPG25_RS00720 WP_000660529.1 155353..156096(+) (comB8) [Helicobacter pylori strain Hpfe059]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment