Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | OG214_RS31825 | Genome accession | NZ_CP108806 |
| Coordinates | 7428155..7429234 (+) | Length | 359 a.a. |
| NCBI ID | WP_365900556.1 | Uniprot ID | - |
| Organism | Streptomyces sp. NBC_00872 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 7423155..7434234
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG214_RS31795 (OG214_31795) | - | 7423555..7424106 (+) | 552 | WP_363084240.1 | hypothetical protein | - |
| OG214_RS31800 (OG214_31800) | pdxS | 7424277..7425191 (+) | 915 | WP_363084239.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| OG214_RS31805 (OG214_31805) | pdxT | 7425198..7425830 (+) | 633 | WP_405986666.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| OG214_RS31810 (OG214_31810) | - | 7425951..7426703 (+) | 753 | WP_363084237.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| OG214_RS31815 (OG214_31815) | ruvC | 7426850..7427425 (+) | 576 | WP_363083446.1 | crossover junction endodeoxyribonuclease RuvC | - |
| OG214_RS31820 (OG214_31820) | ruvA | 7427422..7428045 (+) | 624 | WP_405986667.1 | Holliday junction branch migration protein RuvA | - |
| OG214_RS31825 (OG214_31825) | ruvB | 7428155..7429234 (+) | 1080 | WP_365900556.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| OG214_RS31830 (OG214_31830) | yajC | 7429422..7429886 (+) | 465 | WP_363083437.1 | preprotein translocase subunit YajC | - |
| OG214_RS31835 (OG214_31835) | secD | 7430030..7431814 (+) | 1785 | WP_363083438.1 | protein translocase subunit SecD | - |
| OG214_RS31840 (OG214_31840) | secF | 7431816..7432943 (+) | 1128 | WP_363083439.1 | protein translocase subunit SecF | - |
| OG214_RS31845 (OG214_31845) | - | 7432940..7433485 (+) | 546 | WP_363083440.1 | adenine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 359 a.a. Molecular weight: 38251.60 Da Isoelectric Point: 4.6964
>NTDB_id=667069 OG214_RS31825 WP_365900556.1 7428155..7429234(+) (ruvB) [Streptomyces sp. NBC_00872]
MNWDDTSGETPADAPERLVGASADGEDQAVEAALRPKSLDEFVGQERVREQLDLVLKAALARGATADHVLLSGAPGLGKT
TLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIP
LELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYESAELERVIHRSAQLLDLEIDTEGAAEIAGRSRGTPRIANRLLRR
VRDYAQVKADGYINREVAAVALAVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREG
LLARTPRGRVATPAAWAHLGLAPPPQAPGAGGQQGLFGT
MNWDDTSGETPADAPERLVGASADGEDQAVEAALRPKSLDEFVGQERVREQLDLVLKAALARGATADHVLLSGAPGLGKT
TLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIP
LELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYESAELERVIHRSAQLLDLEIDTEGAAEIAGRSRGTPRIANRLLRR
VRDYAQVKADGYINREVAAVALAVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREG
LLARTPRGRVATPAAWAHLGLAPPPQAPGAGGQQGLFGT
Nucleotide
Download Length: 1080 bp
>NTDB_id=667069 OG214_RS31825 WP_365900556.1 7428155..7429234(+) (ruvB) [Streptomyces sp. NBC_00872]
GTGAACTGGGACGACACCAGCGGTGAGACGCCCGCCGACGCGCCGGAGCGGCTCGTCGGCGCGTCCGCGGACGGCGAGGA
CCAGGCCGTCGAGGCGGCGCTGCGCCCCAAGTCGCTGGACGAGTTCGTGGGCCAGGAGCGCGTCCGCGAGCAGCTCGACC
TGGTGCTGAAGGCGGCCCTGGCGCGCGGTGCCACCGCCGACCATGTGCTGCTCTCCGGCGCGCCGGGGCTGGGCAAGACC
ACCCTTTCCATGATCATCGCGGCGGAGATGAACGCCCCGATCCGTATCACCTCGGGCCCCGCCATCCAGCACGCGGGCGA
TCTCGCCGCGATCCTCTCGTCCCTCCAGGAGGGCGAGGTCCTCTTCCTGGACGAGATCCACCGGATGTCCAGGCCCGCCG
AGGAGATGCTCTACATGGCGATGGAGGACTTCCGTGTCGATGTGATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCG
CTGGAGCTGCCGCCCTTCACCCTGGTCGGCGCCACGACCCGGGCCGGACTGCTGCCGCCCCCGCTGCGCGACCGGTTCGG
TTTCACCGGTCATATGGAGTTCTACGAGAGCGCCGAACTGGAGCGGGTCATCCACCGCTCGGCCCAGCTTCTCGACCTGG
AGATCGACACCGAGGGCGCCGCGGAGATCGCGGGCCGCTCCCGCGGCACGCCCAGGATCGCCAACCGGCTGCTGCGGCGC
GTACGGGACTACGCCCAGGTCAAGGCCGACGGATATATCAACCGCGAGGTCGCCGCCGTCGCCCTCGCGGTGTACGAGGT
CGACGCGCGCGGTCTCGACCGGCTCGACCGGGCCGTGCTCCAGGCCCTGCTCAAGCTCTTCGGCGGCGGACCCGTGGGCC
TGTCGACCCTGGCGGTGGCCGTGGGGGAGGAGCGCGAGACGGTGGAGGAGGTCGCGGAGCCCTTTCTCGTACGGGAGGGA
CTACTCGCGCGCACCCCGCGCGGCCGGGTCGCCACCCCCGCCGCCTGGGCCCACCTCGGACTCGCACCGCCCCCGCAGGC
TCCCGGCGCGGGCGGACAACAGGGTCTGTTCGGGACGTGA
GTGAACTGGGACGACACCAGCGGTGAGACGCCCGCCGACGCGCCGGAGCGGCTCGTCGGCGCGTCCGCGGACGGCGAGGA
CCAGGCCGTCGAGGCGGCGCTGCGCCCCAAGTCGCTGGACGAGTTCGTGGGCCAGGAGCGCGTCCGCGAGCAGCTCGACC
TGGTGCTGAAGGCGGCCCTGGCGCGCGGTGCCACCGCCGACCATGTGCTGCTCTCCGGCGCGCCGGGGCTGGGCAAGACC
ACCCTTTCCATGATCATCGCGGCGGAGATGAACGCCCCGATCCGTATCACCTCGGGCCCCGCCATCCAGCACGCGGGCGA
TCTCGCCGCGATCCTCTCGTCCCTCCAGGAGGGCGAGGTCCTCTTCCTGGACGAGATCCACCGGATGTCCAGGCCCGCCG
AGGAGATGCTCTACATGGCGATGGAGGACTTCCGTGTCGATGTGATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCG
CTGGAGCTGCCGCCCTTCACCCTGGTCGGCGCCACGACCCGGGCCGGACTGCTGCCGCCCCCGCTGCGCGACCGGTTCGG
TTTCACCGGTCATATGGAGTTCTACGAGAGCGCCGAACTGGAGCGGGTCATCCACCGCTCGGCCCAGCTTCTCGACCTGG
AGATCGACACCGAGGGCGCCGCGGAGATCGCGGGCCGCTCCCGCGGCACGCCCAGGATCGCCAACCGGCTGCTGCGGCGC
GTACGGGACTACGCCCAGGTCAAGGCCGACGGATATATCAACCGCGAGGTCGCCGCCGTCGCCCTCGCGGTGTACGAGGT
CGACGCGCGCGGTCTCGACCGGCTCGACCGGGCCGTGCTCCAGGCCCTGCTCAAGCTCTTCGGCGGCGGACCCGTGGGCC
TGTCGACCCTGGCGGTGGCCGTGGGGGAGGAGCGCGAGACGGTGGAGGAGGTCGCGGAGCCCTTTCTCGTACGGGAGGGA
CTACTCGCGCGCACCCCGCGCGGCCGGGTCGCCACCCCCGCCGCCTGGGCCCACCTCGGACTCGCACCGCCCCCGCAGGC
TCCCGGCGCGGGCGGACAACAGGGTCTGTTCGGGACGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
52.888 |
91.643 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
52.632 |
89.972 |
0.474 |
| ruvB | Streptococcus pneumoniae TIGR4 |
51.543 |
90.251 |
0.465 |
| ruvB | Streptococcus pneumoniae R6 |
51.543 |
90.251 |
0.465 |
| ruvB | Streptococcus pneumoniae D39 |
51.543 |
90.251 |
0.465 |
| ruvB | Helicobacter pylori 26695 |
49.686 |
88.579 |
0.44 |