Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG07_RS00715 | Genome accession | NZ_CP094116 |
| Coordinates | 150149..151285 (+) | Length | 378 a.a. |
| NCBI ID | WP_245045845.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe066 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 145149..156285
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG07_RS00680 (MPG07_00680) | panD | 145600..145950 (+) | 351 | WP_000142269.1 | aspartate 1-decarboxylase | - |
| MPG07_RS00685 (MPG07_00685) | - | 145961..146254 (+) | 294 | WP_245045831.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG07_RS00690 (MPG07_00690) | - | 146254..147249 (+) | 996 | WP_245046589.1 | PDZ domain-containing protein | - |
| MPG07_RS00695 (MPG07_00695) | comB6 | 147255..148310 (+) | 1056 | WP_245045833.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG07_RS00700 (MPG07_00700) | comB7 | 148326..148451 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG07_RS00705 (MPG07_00705) | comB8 | 148448..149191 (+) | 744 | WP_245045834.1 | virB8 family protein | Machinery gene |
| MPG07_RS00710 (MPG07_00710) | comB9 | 149191..150156 (+) | 966 | WP_245045836.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG07_RS00715 (MPG07_00715) | comB10 | 150149..151285 (+) | 1137 | WP_245045845.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG07_RS00720 (MPG07_00720) | - | 151352..152764 (+) | 1413 | WP_245045847.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG07_RS00725 (MPG07_00725) | gmd | 152778..153923 (+) | 1146 | WP_245045849.1 | GDP-mannose 4,6-dehydratase | - |
| MPG07_RS00730 (MPG07_00730) | - | 153916..154848 (+) | 933 | WP_245045851.1 | GDP-L-fucose synthase | - |
| MPG07_RS00735 (MPG07_00735) | hypE | 155116..156114 (-) | 999 | WP_245045853.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42089.71 Da Isoelectric Point: 9.9312
>NTDB_id=667069 MPG07_RS00715 WP_245045845.1 150149..151285(+) (comB10) [Helicobacter pylori strain Hpfe066]
MNKWIKGALVFVGGFATIVTISLIYHQKPKVPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGALVFVGGFATIVTISLIYHQKPKVPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=667069 MPG07_RS00715 WP_245045845.1 150149..151285(+) (comB10) [Helicobacter pylori strain Hpfe066]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGTCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATCGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCTAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGTCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATCGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCTAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.238 |
100 |
0.952 |