Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG07_RS00705 Genome accession   NZ_CP094116
Coordinates   148448..149191 (+) Length   247 a.a.
NCBI ID   WP_245045834.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe066     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143448..154191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG07_RS00680 (MPG07_00680) panD 145600..145950 (+) 351 WP_000142269.1 aspartate 1-decarboxylase -
  MPG07_RS00685 (MPG07_00685) - 145961..146254 (+) 294 WP_245045831.1 YbaB/EbfC family nucleoid-associated protein -
  MPG07_RS00690 (MPG07_00690) - 146254..147249 (+) 996 WP_245046589.1 PDZ domain-containing protein -
  MPG07_RS00695 (MPG07_00695) comB6 147255..148310 (+) 1056 WP_245045833.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG07_RS00700 (MPG07_00700) comB7 148326..148451 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG07_RS00705 (MPG07_00705) comB8 148448..149191 (+) 744 WP_245045834.1 virB8 family protein Machinery gene
  MPG07_RS00710 (MPG07_00710) comB9 149191..150156 (+) 966 WP_245045836.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG07_RS00715 (MPG07_00715) comB10 150149..151285 (+) 1137 WP_245045845.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG07_RS00720 (MPG07_00720) - 151352..152764 (+) 1413 WP_245045847.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG07_RS00725 (MPG07_00725) gmd 152778..153923 (+) 1146 WP_245045849.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28746.00 Da        Isoelectric Point: 9.2662

>NTDB_id=667067 MPG07_RS00705 WP_245045834.1 148448..149191(+) (comB8) [Helicobacter pylori strain Hpfe066]
MKERPFNSEQLIYLEELLSHQEKRLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667067 MPG07_RS00705 WP_245045834.1 148448..149191(+) (comB8) [Helicobacter pylori strain Hpfe066]
ATGAAAGAAAGGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCGTTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTTATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCAACTAATAGAGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968

Multiple sequence alignment