Detailed information NTG0667068

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG07_RS00710
• Genome accession: NZ_CP094116
• Coordinates: 149191..150156 (+)
• Length: 321 a.a.
• NCBI ID: WP_245045836.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe066
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144191..155156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG07_RS00680 (MPG07_00680)	panD	145600..145950 (+)	351	WP_000142269.1	aspartate 1-decarboxylase	-
MPG07_RS00685 (MPG07_00685)	-	145961..146254 (+)	294	WP_245045831.1	YbaB/EbfC family nucleoid-associated protein	-
MPG07_RS00690 (MPG07_00690)	-	146254..147249 (+)	996	WP_245046589.1	PDZ domain-containing protein	-
MPG07_RS00695 (MPG07_00695)	comB6	147255..148310 (+)	1056	WP_245045833.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG07_RS00700 (MPG07_00700)	comB7	148326..148451 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG07_RS00705 (MPG07_00705)	comB8	148448..149191 (+)	744	WP_245045834.1	virB8 family protein	Machinery gene
MPG07_RS00710 (MPG07_00710)	comB9	149191..150156 (+)	966	WP_245045836.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG07_RS00715 (MPG07_00715)	comB10	150149..151285 (+)	1137	WP_245045845.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG07_RS00720 (MPG07_00720)	-	151352..152764 (+)	1413	WP_245045847.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG07_RS00725 (MPG07_00725)	gmd	152778..153923 (+)	1146	WP_245045849.1	GDP-mannose 4,6-dehydratase	-
MPG07_RS00730 (MPG07_00730)	-	153916..154848 (+)	933	WP_245045851.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 37059.65 Da
• Isoelectric Point: 9.4631

>NTDB_id=667068 MPG07_RS00710 WP_245045836.1 149191..150156(+) (comB9) [Helicobacter pylori strain Hpfe066]
MRKILYALVGFLLVFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKTPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGRD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667068 MPG07_RS00710 WP_245045836.1 149191..150156(+) (comB9) [Helicobacter pylori strain Hpfe066]
ATGCGTAAGATTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCATCCCATGCAGGATTTAAACGCCATTCAAGGGAGTTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAAGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGACCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGATAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTAGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAGAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.355	100	0.941