Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG17_RS00740 | Genome accession | NZ_CP094107 |
| Coordinates | 155601..156737 (+) | Length | 378 a.a. |
| NCBI ID | WP_245017949.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe074 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 150601..161737
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG17_RS00705 (MPG17_00705) | panD | 151057..151410 (+) | 354 | WP_245017947.1 | aspartate 1-decarboxylase | - |
| MPG17_RS00710 (MPG17_00710) | - | 151413..151706 (+) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG17_RS00715 (MPG17_00715) | - | 151706..152701 (+) | 996 | WP_245018274.1 | PDZ domain-containing protein | - |
| MPG17_RS00720 (MPG17_00720) | comB6 | 152707..153762 (+) | 1056 | WP_245018275.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG17_RS00725 (MPG17_00725) | comB7 | 153778..153903 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG17_RS00730 (MPG17_00730) | comB8 | 153900..154643 (+) | 744 | WP_120935466.1 | virB8 family protein | Machinery gene |
| MPG17_RS00735 (MPG17_00735) | comB9 | 154643..155608 (+) | 966 | WP_245017948.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG17_RS00740 (MPG17_00740) | comB10 | 155601..156737 (+) | 1137 | WP_245017949.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG17_RS00745 (MPG17_00745) | - | 156803..158215 (+) | 1413 | WP_245017950.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG17_RS00750 (MPG17_00750) | gmd | 158229..159374 (+) | 1146 | WP_245017951.1 | GDP-mannose 4,6-dehydratase | - |
| MPG17_RS00755 (MPG17_00755) | - | 159367..160299 (+) | 933 | WP_245017952.1 | GDP-L-fucose synthase | - |
| MPG17_RS00760 (MPG17_00760) | hypE | 160569..161567 (-) | 999 | WP_245017953.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42088.80 Da Isoelectric Point: 9.9750
>NTDB_id=666937 MPG17_RS00740 WP_245017949.1 155601..156737(+) (comB10) [Helicobacter pylori strain Hpfe074]
MNKWLKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQKPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWLKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQKPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666937 MPG17_RS00740 WP_245017949.1 155601..156737(+) (comB10) [Helicobacter pylori strain Hpfe074]
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCATTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAAACCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTCTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAATGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCATTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAAACCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTCTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAATGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |