Detailed information NTG0666933

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG17_RS00720
• Genome accession: NZ_CP094107
• Coordinates: 152707..153762 (+)
• Length: 351 a.a.
• NCBI ID: WP_245018275.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe074
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147707..158762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG17_RS00690 (MPG17_00690)	-	148137..148550 (+)	414	WP_001023005.1	universal stress protein	-
MPG17_RS00695 (MPG17_00695)	-	148570..148845 (+)	276	WP_000784962.1	ATP-dependent Clp protease adaptor ClpS	-
MPG17_RS00700 (MPG17_00700)	-	148845..151067 (+)	2223	WP_245017946.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG17_RS00705 (MPG17_00705)	panD	151057..151410 (+)	354	WP_245017947.1	aspartate 1-decarboxylase	-
MPG17_RS00710 (MPG17_00710)	-	151413..151706 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG17_RS00715 (MPG17_00715)	-	151706..152701 (+)	996	WP_245018274.1	PDZ domain-containing protein	-
MPG17_RS00720 (MPG17_00720)	comB6	152707..153762 (+)	1056	WP_245018275.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG17_RS00725 (MPG17_00725)	comB7	153778..153903 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG17_RS00730 (MPG17_00730)	comB8	153900..154643 (+)	744	WP_120935466.1	virB8 family protein	Machinery gene
MPG17_RS00735 (MPG17_00735)	comB9	154643..155608 (+)	966	WP_245017948.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG17_RS00740 (MPG17_00740)	comB10	155601..156737 (+)	1137	WP_245017949.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG17_RS00745 (MPG17_00745)	-	156803..158215 (+)	1413	WP_245017950.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39861.86 Da
• Isoelectric Point: 8.8165

>NTDB_id=666933 MPG17_RS00720 WP_245018275.1 152707..153762(+) (comB6) [Helicobacter pylori strain Hpfe074]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIVQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666933 MPG17_RS00720 WP_245018275.1 152707..153762(+) (comB6) [Helicobacter pylori strain Hpfe074]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAATGCTATTTTTATTGCGCCCAACATGATCGTGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGTGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACATGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TAGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969