Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OH809_RS03700 Genome accession   NZ_CP108803
Coordinates   775826..778009 (+) Length   727 a.a.
NCBI ID   WP_406424054.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00873     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 770826..783009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH809_RS03680 (OH809_03645) - 771224..771505 (+) 282 WP_406514836.1 hypothetical protein -
  OH809_RS03685 (OH809_03650) - 772240..773466 (-) 1227 WP_406424060.1 cytochrome P450 -
  OH809_RS03690 (OH809_03655) - 773479..774861 (-) 1383 WP_406424058.1 NAD(P)/FAD-dependent oxidoreductase -
  OH809_RS03695 (OH809_03660) - 774858..775067 (-) 210 WP_406424056.1 ferredoxin -
  OH809_RS03700 (OH809_03665) recP/tkt 775826..778009 (+) 2184 WP_406424054.1 transketolase Machinery gene
  OH809_RS03705 (OH809_03670) - 778109..779812 (-) 1704 WP_406424052.1 FAD-dependent oxidoreductase -
  OH809_RS03710 grpE 779850..780203 (-) 354 WP_406424050.1 nucleotide exchange factor GrpE -
  OH809_RS03715 (OH809_03680) dnaK 780213..782102 (-) 1890 WP_406424047.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 78323.14 Da        Isoelectric Point: 5.3827

>NTDB_id=666936 OH809_RS03700 WP_406424054.1 775826..778009(+) (recP/tkt) [Streptomyces sp. NBC_00873]
MDERQEATGMFAGRDAKLALPVADTVGWGPLDVRAVDTVRVLAADAVQKVGNGHPGTAMSLAPLAYLLFQQVMRHDPADD
QWLGRDRFVLSCGHSSLTLYIQLYLSGYGLELQDLEQLRTWGSATPGHPEYRHSRGVEVTTGPLGQGLAAAVGMALAARR
ERGLLDPDAPPGESPFDHHVYVVASDGDLMEGVTSEASSLAGHQELGNLVVFYDSNHISIEDDTEISFSEDVAARYSAYG
WQVQTVDFTLTGSYVEDVDALSAAITAAKQDTSRPSMIVLRTVIGWPAPTKQNTGKAHGAALGDEEVAATKALLGFDPGR
SFVVEDEVLAHVRKVRERGAAARRQWESVYERWRAAHPDRAALLDRLRDRRLPDGWADKLPTFPADPAGMATRKASGEVL
TALAPVLPELWGGSADLAGSNNTTMKGEPSFIPVAKQTSEWQGNPYGRTLHFGIREHAMAAILNGIALQSLTRPYGGTFL
VFSDYMRPAVRLAALMRLPATYVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLDVVRPADANETTVCWRTIIEHQDRPAG
LVLTRQPLPVLERGADTHAPAEEAARGAYVLVDRADGQPDVVLVATGSEVHIALQARDLLAADGYEARVVSMPCREWFHA
QPSAYQNAVLPPAVRARVSVEAAVGQGWRDIVGDAGHIVGLEHFGASADYQRLYREFDITPQAVVAAALSSIRAASGTVK
PGGERPA

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=666936 OH809_RS03700 WP_406424054.1 775826..778009(+) (recP/tkt) [Streptomyces sp. NBC_00873]
ATGGATGAGCGACAGGAAGCCACCGGAATGTTTGCGGGTCGTGATGCGAAGCTCGCACTTCCGGTCGCGGACACGGTGGG
CTGGGGTCCGCTGGATGTACGAGCGGTGGACACCGTACGCGTTCTGGCCGCTGACGCGGTCCAGAAGGTGGGAAACGGTC
ATCCGGGAACGGCGATGAGCCTGGCCCCGCTGGCCTATCTGCTGTTCCAGCAGGTCATGCGCCACGACCCTGCCGATGAC
CAATGGCTGGGGCGCGATCGATTCGTGCTCTCCTGCGGGCACTCAAGTCTCACTCTGTACATCCAGCTGTACCTCAGCGG
GTACGGACTGGAGCTGCAGGATCTCGAGCAGCTCCGTACCTGGGGCTCCGCAACGCCGGGGCATCCGGAATACCGCCACA
GCCGGGGTGTGGAGGTCACCACGGGACCGCTGGGCCAAGGGCTGGCCGCCGCGGTGGGGATGGCGCTGGCGGCACGGCGC
GAGCGCGGGCTGCTGGATCCCGACGCCCCGCCGGGTGAGAGCCCATTCGACCATCACGTGTACGTCGTCGCCTCGGACGG
CGACCTCATGGAAGGAGTCACATCGGAGGCGAGTTCGCTCGCCGGGCACCAGGAACTGGGCAATCTGGTCGTCTTCTACG
ACTCCAACCACATCTCGATCGAGGACGACACCGAGATCTCGTTCAGCGAGGATGTCGCCGCGCGCTACTCCGCGTACGGA
TGGCAGGTGCAGACAGTCGACTTCACACTCACGGGCTCCTATGTCGAGGACGTCGACGCCCTCTCGGCGGCGATCACGGC
CGCCAAGCAGGACACTTCGCGGCCGTCCATGATCGTGCTGCGTACGGTCATCGGCTGGCCCGCCCCCACGAAGCAGAACA
CCGGAAAGGCCCATGGCGCAGCGCTCGGTGACGAAGAAGTCGCCGCCACCAAGGCCTTGCTGGGCTTCGACCCGGGTCGG
AGCTTCGTCGTGGAGGATGAAGTCCTGGCCCACGTCAGGAAGGTGCGGGAGCGGGGCGCTGCCGCCCGTCGCCAGTGGGA
GAGCGTGTATGAGAGGTGGCGCGCTGCCCATCCTGACCGGGCCGCGCTGCTTGACCGGTTGCGCGACCGGCGTCTGCCCG
ACGGCTGGGCCGACAAGCTGCCGACTTTCCCCGCCGACCCTGCCGGAATGGCCACCCGCAAGGCATCCGGCGAGGTACTG
ACGGCGCTGGCGCCCGTCCTGCCCGAGCTGTGGGGTGGGTCCGCCGATCTTGCGGGGAGCAATAACACCACGATGAAGGG
GGAACCCTCCTTCATCCCGGTCGCCAAGCAGACGTCCGAGTGGCAGGGCAATCCCTATGGGCGGACGTTGCACTTCGGCA
TCCGTGAGCACGCCATGGCCGCAATCCTCAACGGCATCGCGTTGCAGAGTCTGACACGTCCCTACGGCGGCACATTCCTC
GTCTTCAGCGACTACATGCGTCCGGCTGTCCGTCTGGCAGCGCTCATGCGCCTCCCGGCCACCTACGTCTGGACGCATGA
CTCCATCGGTTTGGGCGAGGACGGGCCCACCCATCAGCCCGTCGAGCACCTGGCCGCGCTACGCGCGATTCCTGGCCTCG
ACGTCGTACGGCCGGCCGATGCGAACGAGACCACCGTCTGCTGGCGCACCATCATCGAGCATCAGGACAGGCCCGCCGGT
CTCGTGCTCACCCGGCAGCCGCTGCCCGTCCTGGAACGGGGCGCCGACACCCATGCCCCGGCCGAGGAAGCGGCCCGCGG
CGCGTACGTCCTCGTGGACCGTGCCGACGGGCAGCCCGACGTCGTCCTTGTCGCGACCGGCTCGGAGGTGCACATCGCCC
TGCAGGCGCGTGACCTGCTGGCTGCCGACGGGTACGAGGCACGCGTGGTGTCCATGCCGTGCCGGGAGTGGTTCCACGCT
CAGCCCTCTGCCTATCAGAACGCGGTACTGCCGCCCGCTGTGCGCGCCCGCGTGAGCGTCGAGGCGGCCGTTGGTCAGGG
CTGGCGCGACATCGTGGGCGACGCCGGCCACATCGTCGGTCTGGAGCACTTCGGCGCCTCCGCCGACTATCAGCGCCTCT
ACCGGGAATTCGACATCACGCCGCAGGCTGTGGTTGCTGCAGCCCTCAGCAGCATCCGTGCGGCCTCCGGCACGGTGAAG
CCAGGCGGAGAGCGGCCCGCCTAG

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(593-704)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(33-373)

Transketolase, pyrimidine binding domain (Transket_pyr)

(389-569)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

43.732

94.36

0.413