Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPF92_RS00795 | Genome accession | NZ_CP094106 |
| Coordinates | 178715..179851 (+) | Length | 378 a.a. |
| NCBI ID | WP_245023943.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe075 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 173715..184851
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF92_RS00760 (MPF92_00760) | panD | 174169..174519 (+) | 351 | WP_025223382.1 | aspartate 1-decarboxylase | - |
| MPF92_RS00765 (MPF92_00765) | - | 174530..174823 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPF92_RS00770 (MPF92_00770) | - | 174823..175818 (+) | 996 | WP_245024426.1 | PDZ domain-containing protein | - |
| MPF92_RS00775 (MPF92_00775) | comB6 | 175824..176879 (+) | 1056 | WP_245023940.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPF92_RS00780 (MPF92_00780) | comB7 | 176895..177020 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPF92_RS00785 (MPF92_00785) | comB8 | 177017..177760 (+) | 744 | WP_245023941.1 | virB8 family protein | Machinery gene |
| MPF92_RS00790 (MPF92_00790) | comB9 | 177760..178722 (+) | 963 | WP_245023942.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPF92_RS00795 (MPF92_00795) | comB10 | 178715..179851 (+) | 1137 | WP_245023943.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPF92_RS00800 (MPF92_00800) | - | 179921..181333 (+) | 1413 | WP_245023944.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPF92_RS00805 (MPF92_00805) | gmd | 181347..182492 (+) | 1146 | WP_245023945.1 | GDP-mannose 4,6-dehydratase | - |
| MPF92_RS00810 (MPF92_00810) | - | 182485..183417 (+) | 933 | WP_245023946.1 | GDP-L-fucose synthase | - |
| MPF92_RS00815 (MPF92_00815) | hypE | 183715..184713 (-) | 999 | WP_245023947.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42067.66 Da Isoelectric Point: 9.9312
>NTDB_id=666915 MPF92_RS00795 WP_245023943.1 178715..179851(+) (comB10) [Helicobacter pylori strain Hpfe075]
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFASPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFASPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666915 MPF92_RS00795 WP_245023943.1 178715..179851(+) (comB10) [Helicobacter pylori strain Hpfe075]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTGCTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTTTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTGCTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTTTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.561 |
100 |
0.966 |