Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPF92_RS00785 Genome accession   NZ_CP094106
Coordinates   177017..177760 (+) Length   247 a.a.
NCBI ID   WP_245023941.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe075     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172017..182760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF92_RS00760 (MPF92_00760) panD 174169..174519 (+) 351 WP_025223382.1 aspartate 1-decarboxylase -
  MPF92_RS00765 (MPF92_00765) - 174530..174823 (+) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  MPF92_RS00770 (MPF92_00770) - 174823..175818 (+) 996 WP_245024426.1 PDZ domain-containing protein -
  MPF92_RS00775 (MPF92_00775) comB6 175824..176879 (+) 1056 WP_245023940.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF92_RS00780 (MPF92_00780) comB7 176895..177020 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPF92_RS00785 (MPF92_00785) comB8 177017..177760 (+) 744 WP_245023941.1 virB8 family protein Machinery gene
  MPF92_RS00790 (MPF92_00790) comB9 177760..178722 (+) 963 WP_245023942.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF92_RS00795 (MPF92_00795) comB10 178715..179851 (+) 1137 WP_245023943.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF92_RS00800 (MPF92_00800) - 179921..181333 (+) 1413 WP_245023944.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPF92_RS00805 (MPF92_00805) gmd 181347..182492 (+) 1146 WP_245023945.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28761.01 Da        Isoelectric Point: 8.9546

>NTDB_id=666913 MPF92_RS00785 WP_245023941.1 177017..177760(+) (comB8) [Helicobacter pylori strain Hpfe075]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIAFILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666913 MPF92_RS00785 WP_245023941.1 177017..177760(+) (comB8) [Helicobacter pylori strain Hpfe075]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTAGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTTTTATCTTAGCGATCGTGTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976