Detailed information NTG0666914

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF92_RS00790
• Genome accession: NZ_CP094106
• Coordinates: 177760..178722 (+)
• Length: 320 a.a.
• NCBI ID: WP_245023942.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe075
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 172760..183722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF92_RS00760 (MPF92_00760)	panD	174169..174519 (+)	351	WP_025223382.1	aspartate 1-decarboxylase	-
MPF92_RS00765 (MPF92_00765)	-	174530..174823 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPF92_RS00770 (MPF92_00770)	-	174823..175818 (+)	996	WP_245024426.1	PDZ domain-containing protein	-
MPF92_RS00775 (MPF92_00775)	comB6	175824..176879 (+)	1056	WP_245023940.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF92_RS00780 (MPF92_00780)	comB7	176895..177020 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPF92_RS00785 (MPF92_00785)	comB8	177017..177760 (+)	744	WP_245023941.1	virB8 family protein	Machinery gene
MPF92_RS00790 (MPF92_00790)	comB9	177760..178722 (+)	963	WP_245023942.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF92_RS00795 (MPF92_00795)	comB10	178715..179851 (+)	1137	WP_245023943.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF92_RS00800 (MPF92_00800)	-	179921..181333 (+)	1413	WP_245023944.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF92_RS00805 (MPF92_00805)	gmd	181347..182492 (+)	1146	WP_245023945.1	GDP-mannose 4,6-dehydratase	-
MPF92_RS00810 (MPF92_00810)	-	182485..183417 (+)	933	WP_245023946.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36807.40 Da
• Isoelectric Point: 9.3756

>NTDB_id=666914 MPF92_RS00790 WP_245023942.1 177760..178722(+) (comB9) [Helicobacter pylori strain Hpfe075]
MRKVLCTLVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666914 MPF92_RS00790 WP_245023942.1 177760..178722(+) (comB9) [Helicobacter pylori strain Hpfe075]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCTTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.941