Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG19_RS00990 | Genome accession | NZ_CP094094 |
| Coordinates | 213141..214277 (+) | Length | 378 a.a. |
| NCBI ID | WP_245066389.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe084 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 208141..219277
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG19_RS00955 (MPG19_00955) | panD | 208595..208945 (+) | 351 | WP_000142212.1 | aspartate 1-decarboxylase | - |
| MPG19_RS00960 (MPG19_00960) | - | 208956..209249 (+) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG19_RS00965 (MPG19_00965) | - | 209249..210244 (+) | 996 | WP_245067050.1 | PDZ domain-containing protein | - |
| MPG19_RS00970 (MPG19_00970) | comB6 | 210250..211305 (+) | 1056 | WP_245066385.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG19_RS00975 (MPG19_00975) | comB7 | 211321..211446 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG19_RS00980 (MPG19_00980) | comB8 | 211443..212186 (+) | 744 | WP_120935466.1 | virB8 family protein | Machinery gene |
| MPG19_RS00985 (MPG19_00985) | comB9 | 212186..213148 (+) | 963 | WP_245066387.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG19_RS00990 (MPG19_00990) | comB10 | 213141..214277 (+) | 1137 | WP_245066389.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG19_RS00995 (MPG19_00995) | - | 214347..215759 (+) | 1413 | WP_245066391.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG19_RS01000 (MPG19_01000) | gmd | 215773..216918 (+) | 1146 | WP_245066393.1 | GDP-mannose 4,6-dehydratase | - |
| MPG19_RS01005 (MPG19_01005) | - | 216911..217843 (+) | 933 | WP_245066395.1 | GDP-L-fucose synthase | - |
| MPG19_RS01010 (MPG19_01010) | hypE | 218094..219092 (-) | 999 | WP_245066397.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42142.81 Da Isoelectric Point: 9.9837
>NTDB_id=666752 MPG19_RS00990 WP_245066389.1 213141..214277(+) (comB10) [Helicobacter pylori strain Hpfe084]
MNKWLKGALVFVGGFVTIITISLIYHQKPKVPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKANTTPSKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWLKGALVFVGGFVTIITISLIYHQKPKVPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKANTTPSKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666752 MPG19_RS00990 WP_245066389.1 213141..214277(+) (comB10) [Helicobacter pylori strain Hpfe084]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGTAACGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGTCCCATTAAATAACCAACCCAACCTTTTGAATGACGATGAAGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCTCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATCGCTGGTAAAGTCATTGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGTAACGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGTCCCATTAAATAACCAACCCAACCTTTTGAATGACGATGAAGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCTCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATCGCTGGTAAAGTCATTGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |