Detailed information NTG0666751

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG19_RS00985
• Genome accession: NZ_CP094094
• Coordinates: 212186..213148 (+)
• Length: 320 a.a.
• NCBI ID: WP_245066387.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe084
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 207186..218148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG19_RS00955 (MPG19_00955)	panD	208595..208945 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG19_RS00960 (MPG19_00960)	-	208956..209249 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG19_RS00965 (MPG19_00965)	-	209249..210244 (+)	996	WP_245067050.1	PDZ domain-containing protein	-
MPG19_RS00970 (MPG19_00970)	comB6	210250..211305 (+)	1056	WP_245066385.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG19_RS00975 (MPG19_00975)	comB7	211321..211446 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG19_RS00980 (MPG19_00980)	comB8	211443..212186 (+)	744	WP_120935466.1	virB8 family protein	Machinery gene
MPG19_RS00985 (MPG19_00985)	comB9	212186..213148 (+)	963	WP_245066387.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG19_RS00990 (MPG19_00990)	comB10	213141..214277 (+)	1137	WP_245066389.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG19_RS00995 (MPG19_00995)	-	214347..215759 (+)	1413	WP_245066391.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG19_RS01000 (MPG19_01000)	gmd	215773..216918 (+)	1146	WP_245066393.1	GDP-mannose 4,6-dehydratase	-
MPG19_RS01005 (MPG19_01005)	-	216911..217843 (+)	933	WP_245066395.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36697.28 Da
• Isoelectric Point: 9.3714

>NTDB_id=666751 MPG19_RS00985 WP_245066387.1 212186..213148(+) (comB9) [Helicobacter pylori strain Hpfe084]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666751 MPG19_RS00985 WP_245066387.1 212186..213148(+) (comB9) [Helicobacter pylori strain Hpfe084]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.941