Detailed information NTG0666748

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG19_RS00970
• Genome accession: NZ_CP094094
• Coordinates: 210250..211305 (+)
• Length: 351 a.a.
• NCBI ID: WP_245066385.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe084
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 205250..216305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG19_RS00940 (MPG19_00940)	-	205675..206088 (+)	414	WP_128024682.1	universal stress protein	-
MPG19_RS00945 (MPG19_00945)	-	206108..206383 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
MPG19_RS00950 (MPG19_00950)	-	206383..208605 (+)	2223	WP_245066383.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG19_RS00955 (MPG19_00955)	panD	208595..208945 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG19_RS00960 (MPG19_00960)	-	208956..209249 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG19_RS00965 (MPG19_00965)	-	209249..210244 (+)	996	WP_245067050.1	PDZ domain-containing protein	-
MPG19_RS00970 (MPG19_00970)	comB6	210250..211305 (+)	1056	WP_245066385.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG19_RS00975 (MPG19_00975)	comB7	211321..211446 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG19_RS00980 (MPG19_00980)	comB8	211443..212186 (+)	744	WP_120935466.1	virB8 family protein	Machinery gene
MPG19_RS00985 (MPG19_00985)	comB9	212186..213148 (+)	963	WP_245066387.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG19_RS00990 (MPG19_00990)	comB10	213141..214277 (+)	1137	WP_245066389.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG19_RS00995 (MPG19_00995)	-	214347..215759 (+)	1413	WP_245066391.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39857.80 Da
• Isoelectric Point: 8.8165

>NTDB_id=666748 MPG19_RS00970 WP_245066385.1 210250..211305(+) (comB6) [Helicobacter pylori strain Hpfe084]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALMFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPSASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666748 MPG19_RS00970 WP_245066385.1 210250..211305(+) (comB6) [Helicobacter pylori strain Hpfe084]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCTAGTGCGCTAACAGAAGCGTTAATGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCGCTTTCTTTAGATTTCATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGTGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCATCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCGAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963