Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   MPG05_RS00715 Genome accession   NZ_CP094079
Coordinates   149748..150716 (+) Length   322 a.a.
NCBI ID   WP_245070625.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe100     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144748..155716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG05_RS00685 (MPG05_00685) panD 146166..146519 (+) 354 WP_220984364.1 aspartate 1-decarboxylase -
  MPG05_RS00690 (MPG05_00690) - 146522..146815 (+) 294 WP_048944407.1 YbaB/EbfC family nucleoid-associated protein -
  MPG05_RS00695 (MPG05_00695) - 146815..147810 (+) 996 WP_180401319.1 PDZ domain-containing protein -
  MPG05_RS00700 (MPG05_00700) comB6 147818..148873 (+) 1056 WP_245071208.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG05_RS00705 (MPG05_00705) comB7 148889..149014 (+) 126 WP_140483961.1 comB7 lipoprotein Machinery gene
  MPG05_RS00710 (MPG05_00710) comB8 149011..149748 (+) 738 WP_120836407.1 virB8 family protein Machinery gene
  MPG05_RS00715 (MPG05_00715) comB9 149748..150716 (+) 969 WP_245070625.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG05_RS00720 (MPG05_00720) comB10 150709..151845 (+) 1137 WP_245070627.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG05_RS00725 (MPG05_00725) - 151911..153323 (+) 1413 WP_245070629.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG05_RS00730 (MPG05_00730) gmd 153337..154482 (+) 1146 WP_245070631.1 GDP-mannose 4,6-dehydratase -
  MPG05_RS00735 (MPG05_00735) - 154475..155407 (+) 933 WP_245070633.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 37115.73 Da        Isoelectric Point: 9.3713

>NTDB_id=666519 MPG05_RS00715 WP_245070625.1 149748..150716(+) (comB9) [Helicobacter pylori strain Hpfe100]
MRKVLCALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQKKENTLENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKK
SKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGK
DE

Nucleotide


Download         Length: 969 bp        

>NTDB_id=666519 MPG05_RS00715 WP_245070625.1 149748..150716(+) (comB9) [Helicobacter pylori strain Hpfe100]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGTTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAAAAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTA
AAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAA
TCCAAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCT
CTCTAAATTCCCGGTGATTTACAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATATTA
TCGCTGAAGATGTTTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAA
GATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

94.172

100

0.953