Detailed information NTG0666516

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG05_RS00700
• Genome accession: NZ_CP094079
• Coordinates: 147818..148873 (+)
• Length: 351 a.a.
• NCBI ID: WP_245071208.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe100
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 142818..153873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG05_RS00670 (MPG05_00670)	-	143252..143665 (+)	414	WP_128024682.1	universal stress protein	-
MPG05_RS00675 (MPG05_00675)	-	143679..143954 (+)	276	WP_245071206.1	ATP-dependent Clp protease adaptor ClpS	-
MPG05_RS00680 (MPG05_00680)	-	143954..146176 (+)	2223	WP_245070623.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG05_RS00685 (MPG05_00685)	panD	146166..146519 (+)	354	WP_220984364.1	aspartate 1-decarboxylase	-
MPG05_RS00690 (MPG05_00690)	-	146522..146815 (+)	294	WP_048944407.1	YbaB/EbfC family nucleoid-associated protein	-
MPG05_RS00695 (MPG05_00695)	-	146815..147810 (+)	996	WP_180401319.1	PDZ domain-containing protein	-
MPG05_RS00700 (MPG05_00700)	comB6	147818..148873 (+)	1056	WP_245071208.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG05_RS00705 (MPG05_00705)	comB7	148889..149014 (+)	126	WP_140483961.1	comB7 lipoprotein	Machinery gene
MPG05_RS00710 (MPG05_00710)	comB8	149011..149748 (+)	738	WP_120836407.1	virB8 family protein	Machinery gene
MPG05_RS00715 (MPG05_00715)	comB9	149748..150716 (+)	969	WP_245070625.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG05_RS00720 (MPG05_00720)	comB10	150709..151845 (+)	1137	WP_245070627.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG05_RS00725 (MPG05_00725)	-	151911..153323 (+)	1413	WP_245070629.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39851.82 Da
• Isoelectric Point: 8.8165

>NTDB_id=666516 MPG05_RS00700 WP_245071208.1 147818..148873(+) (comB6) [Helicobacter pylori strain Hpfe100]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIVPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666516 MPG05_RS00700 WP_245071208.1 147818..148873(+) (comB6) [Helicobacter pylori strain Hpfe100]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTTACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATCTTTATTGTGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGCTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTAAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTTATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974