Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG05_RS00720 | Genome accession | NZ_CP094079 |
| Coordinates | 150709..151845 (+) | Length | 378 a.a. |
| NCBI ID | WP_245070627.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe100 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 145709..156845
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG05_RS00685 (MPG05_00685) | panD | 146166..146519 (+) | 354 | WP_220984364.1 | aspartate 1-decarboxylase | - |
| MPG05_RS00690 (MPG05_00690) | - | 146522..146815 (+) | 294 | WP_048944407.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG05_RS00695 (MPG05_00695) | - | 146815..147810 (+) | 996 | WP_180401319.1 | PDZ domain-containing protein | - |
| MPG05_RS00700 (MPG05_00700) | comB6 | 147818..148873 (+) | 1056 | WP_245071208.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG05_RS00705 (MPG05_00705) | comB7 | 148889..149014 (+) | 126 | WP_140483961.1 | comB7 lipoprotein | Machinery gene |
| MPG05_RS00710 (MPG05_00710) | comB8 | 149011..149748 (+) | 738 | WP_120836407.1 | virB8 family protein | Machinery gene |
| MPG05_RS00715 (MPG05_00715) | comB9 | 149748..150716 (+) | 969 | WP_245070625.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG05_RS00720 (MPG05_00720) | comB10 | 150709..151845 (+) | 1137 | WP_245070627.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG05_RS00725 (MPG05_00725) | - | 151911..153323 (+) | 1413 | WP_245070629.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG05_RS00730 (MPG05_00730) | gmd | 153337..154482 (+) | 1146 | WP_245070631.1 | GDP-mannose 4,6-dehydratase | - |
| MPG05_RS00735 (MPG05_00735) | - | 154475..155407 (+) | 933 | WP_245070633.1 | GDP-L-fucose synthase | - |
| MPG05_RS00740 (MPG05_00740) | hypE | 155657..156655 (-) | 999 | WP_220929754.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42022.61 Da Isoelectric Point: 9.8382
>NTDB_id=666520 MPG05_RS00720 WP_245070627.1 150709..151845(+) (comB10) [Helicobacter pylori strain Hpfe100]
MNKWIKGVLVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQKPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDSKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNKGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWIKGVLVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQKPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDSKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNKGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666520 MPG05_RS00720 WP_245070627.1 150709..151845(+) (comB10) [Helicobacter pylori strain Hpfe100]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAAACCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTCAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAAGGGCAATAAAGAAGGAGTTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAAACCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTCAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAAGGGCAATAAAGAAGGAGTTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.444 |
100 |
0.944 |