Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG844_RS08920 Genome accession   NZ_CP108788
Coordinates   1947617..1949734 (-) Length   705 a.a.
NCBI ID   WP_406389329.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00887     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1942617..1954734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG844_RS08900 (OG844_08905) - 1942807..1943463 (+) 657 WP_406389326.1 MBL fold metallo-hydrolase -
  OG844_RS08905 (OG844_08910) - 1943560..1944567 (-) 1008 WP_406389327.1 TerC family protein -
  OG844_RS08910 (OG844_08915) - 1944826..1946796 (-) 1971 WP_406389328.1 TerD family protein -
  OG844_RS08915 (OG844_08920) - 1946906..1947484 (-) 579 WP_351175929.1 TerD family protein -
  OG844_RS08920 (OG844_08925) uvrB 1947617..1949734 (-) 2118 WP_406389329.1 excinuclease ABC subunit UvrB Machinery gene
  OG844_RS08925 (OG844_08930) - 1949774..1950646 (-) 873 WP_406389330.1 MHYT domain-containing protein -
  OG844_RS08930 (OG844_08935) - 1950860..1951732 (+) 873 WP_406389331.1 glycerophosphodiester phosphodiesterase -
  OG844_RS08935 (OG844_08940) - 1951788..1952333 (+) 546 WP_406389332.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG844_RS08940 (OG844_08945) - 1952441..1953721 (+) 1281 WP_406389333.1 MFS transporter -
  OG844_RS08945 (OG844_08950) - 1953783..1954730 (+) 948 WP_406389334.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 705 a.a.        Molecular weight: 79005.75 Da        Isoelectric Point: 4.9397

>NTDB_id=666520 OG844_RS08920 WP_406389329.1 1947617..1949734(-) (uvrB) [Streptomyces sp. NBC_00887]
MRPVSKIERSMAPFEVISPYQPSGDQPAAIAELERRVRGAEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVQLKVGDEIDRDQLLRRFVEIQYTRNDLAFARGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDQSLHVFPASHYVAGPERMEKAVGGIEAELQQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDGRDPGTAPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLGRINQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMAQAIDETNRRREKQIAYNTERGLDPQPLRKKINDIVATIAREEVDTEQLLGTGYRQGKGAKAPVPALGGKAS
AGKAKGGGAAVTDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2118 bp        

>NTDB_id=666520 OG844_RS08920 WP_406389329.1 1947617..1949734(-) (uvrB) [Streptomyces sp. NBC_00887]
ATGCGGCCCGTTTCGAAGATCGAACGTTCGATGGCGCCTTTCGAGGTCATCAGTCCCTACCAGCCCAGCGGTGACCAGCC
CGCGGCCATCGCCGAGCTGGAGCGGCGTGTCCGCGGCGCCGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCGGCGACGACCGCGTGGATGATCGAGAAGCTGCAGCGGCCGACCCTGGTGATGGCGCCCAACAAGACGCTGGCCGCA
CAGCTGGCCAACGAGTTCCGCGAGCTCCTCCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAACGGCTGCGCCACT
CCGCCACGAACTCGCTTCTGACCCGGCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACACCG
CAGGAGTACGTGGACCGGATGGTCCAGCTCAAGGTCGGCGACGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTCGA
GATCCAGTACACCCGCAACGACCTGGCGTTCGCCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TGTACGAGGAGCTCGCCGTCCGGATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCCACCCTCCACCCGCTCACCGGC
GAGGTCATCAGCGAGGACCAGTCGCTCCACGTCTTTCCCGCCAGCCACTACGTGGCGGGCCCCGAGCGCATGGAGAAGGC
GGTCGGCGGCATCGAGGCGGAGCTCCAGCAGCGCCTCGCGGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGGC
TGCGCATGCGCACGACGTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGTGATCCGGGCACCGCGCCCAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTCCTCGTCCTGGACGA
GTCGCACGTCACGGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGGAAGCGGACTCTCGTCGACCACGGCT
TCCGCCTGCCCTCCGCCCTGGACAACCGCCCGCTGAAATGGGAGGAGTTCCTGGGCCGGATCAACCAGACCGTCTATCTG
TCCGCCACCCCGGGGAAGTACGAGCTCTCCCGGGGCGACGGATTCGTGGAGCAGATCATCCGGCCCACCGGGCTCGTCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGGACCGAGAAGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGTCCGAGGACCTCACCGACTACTTCCTCGAGCTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAGCTGCTGCGCGAACTGCGCTCCGGCGAGTACGACGTCCT
GGTCGGGATCAACCTGCTGCGTGAGGGCCTCGACCTTCCCGAGGTGTCACTCGTGGCCATCCTCGACGCGGACAAGCAGG
GCTTCCTGCGGTCCGGCACCTCCCTGATCCAGACCATCGGCCGTGCGGCCCGAAACGTGTCCGGTCAGGTCCATATGTAC
GCGGACAAGATCACTCCGGCGATGGCTCAGGCCATCGACGAGACCAACCGCCGCCGTGAGAAGCAGATCGCGTACAACAC
CGAGCGCGGGCTCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGACCATCGCCCGCGAGGAGGTCGACA
CCGAGCAGCTCCTCGGCACCGGCTACCGGCAGGGCAAGGGGGCCAAGGCCCCCGTGCCCGCGCTCGGCGGCAAGGCCTCC
GCCGGCAAGGCCAAGGGGGGTGGCGCGGCGGTCACCGACCGGCCCGCCACGGAACTCGCCGGGATCATCGAGGAGATGAC
GGACCGGATGCGGGCGGCCGCCGCGGACCTGCAGTTCGAGGTGGCCGCCCGACTGCGCGACGAGGTGGGCGAGTTGAAGA
AGGAGCTGCGCCAGATGAGGGAGGCGGGACTGGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(663-695)

UvrB interaction domain (UvrB_inter)

(168-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.725

97.021

0.55
  uvrB Streptococcus pneumoniae R6

56.725

97.021

0.55
  uvrB Streptococcus pneumoniae D39

56.725

97.021

0.55