Detailed information NTG0666439

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG32_RS05525
• Genome accession: NZ_CP094073
• Coordinates: 1160292..1161254 (-)
• Length: 320 a.a.
• NCBI ID: WP_245019680.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe104
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1155292..1166254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG32_RS05505 (MPG32_05505)	-	1155597..1156529 (-)	933	WP_245036752.1	GDP-L-fucose synthase	-
MPG32_RS05510 (MPG32_05510)	gmd	1156522..1157667 (-)	1146	WP_031214491.1	GDP-mannose 4,6-dehydratase	-
MPG32_RS05515 (MPG32_05515)	-	1157681..1159093 (-)	1413	WP_245019682.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG32_RS05520 (MPG32_05520)	comB10	1159163..1160299 (-)	1137	WP_245019681.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG32_RS05525 (MPG32_05525)	comB9	1160292..1161254 (-)	963	WP_245019680.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG32_RS05530 (MPG32_05530)	comB8	1161254..1161997 (-)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPG32_RS05535 (MPG32_05535)	comB7	1161994..1162119 (-)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG32_RS05540 (MPG32_05540)	comB6	1162135..1163190 (-)	1056	WP_245036753.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG32_RS05545 (MPG32_05545)	-	1163196..1164191 (-)	996	WP_245037541.1	PDZ domain-containing protein	-
MPG32_RS05550 (MPG32_05550)	-	1164191..1164484 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG32_RS05555 (MPG32_05555)	panD	1164494..1164844 (-)	351	WP_000142212.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36854.46 Da
• Isoelectric Point: 8.9399

>NTDB_id=666439 MPG32_RS05525 WP_245019680.1 1160292..1161254(-) (comB9) [Helicobacter pylori strain Hpfe104]
MCKILCTLVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQESFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666439 MPG32_RS05525 WP_245019680.1 1160292..1161254(-) (comB9) [Helicobacter pylori strain Hpfe104]
ATGTGTAAGATTTTATGCACTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGAGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAACCGCAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGCAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.934