Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG32_RS05520 Genome accession   NZ_CP094073
Coordinates   1159163..1160299 (-) Length   378 a.a.
NCBI ID   WP_245019681.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe104     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154163..1165299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG32_RS05500 (MPG32_05500) hypE 1154347..1155345 (+) 999 WP_245036751.1 hydrogenase expression/formation protein HypE -
  MPG32_RS05505 (MPG32_05505) - 1155597..1156529 (-) 933 WP_245036752.1 GDP-L-fucose synthase -
  MPG32_RS05510 (MPG32_05510) gmd 1156522..1157667 (-) 1146 WP_031214491.1 GDP-mannose 4,6-dehydratase -
  MPG32_RS05515 (MPG32_05515) - 1157681..1159093 (-) 1413 WP_245019682.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG32_RS05520 (MPG32_05520) comB10 1159163..1160299 (-) 1137 WP_245019681.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG32_RS05525 (MPG32_05525) comB9 1160292..1161254 (-) 963 WP_245019680.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG32_RS05530 (MPG32_05530) comB8 1161254..1161997 (-) 744 WP_000660533.1 virB8 family protein Machinery gene
  MPG32_RS05535 (MPG32_05535) comB7 1161994..1162119 (-) 126 WP_001217867.1 hypothetical protein Machinery gene
  MPG32_RS05540 (MPG32_05540) comB6 1162135..1163190 (-) 1056 WP_245036753.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG32_RS05545 (MPG32_05545) - 1163196..1164191 (-) 996 WP_245037541.1 PDZ domain-containing protein -
  MPG32_RS05550 (MPG32_05550) - 1164191..1164484 (-) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPG32_RS05555 (MPG32_05555) panD 1164494..1164844 (-) 351 WP_000142212.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42069.68 Da        Isoelectric Point: 9.9227

>NTDB_id=666438 MPG32_RS05520 WP_245019681.1 1159163..1160299(-) (comB10) [Helicobacter pylori strain Hpfe104]
MNKWIKGVLVFAGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIIWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=666438 MPG32_RS05520 WP_245019681.1 1159163..1160299(-) (comB10) [Helicobacter pylori strain Hpfe104]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGCAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACCCAAAACCCACAGCCGACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATTGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTATATGGAGT
CGCATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACCCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTGTTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

95.767

100

0.958