Detailed information NTG0666442

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG32_RS05540
• Genome accession: NZ_CP094073
• Coordinates: 1162135..1163190 (-)
• Length: 351 a.a.
• NCBI ID: WP_245036753.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe104
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1157135..1168190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG32_RS05515 (MPG32_05515)	-	1157681..1159093 (-)	1413	WP_245019682.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG32_RS05520 (MPG32_05520)	comB10	1159163..1160299 (-)	1137	WP_245019681.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG32_RS05525 (MPG32_05525)	comB9	1160292..1161254 (-)	963	WP_245019680.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG32_RS05530 (MPG32_05530)	comB8	1161254..1161997 (-)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPG32_RS05535 (MPG32_05535)	comB7	1161994..1162119 (-)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG32_RS05540 (MPG32_05540)	comB6	1162135..1163190 (-)	1056	WP_245036753.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG32_RS05545 (MPG32_05545)	-	1163196..1164191 (-)	996	WP_245037541.1	PDZ domain-containing protein	-
MPG32_RS05550 (MPG32_05550)	-	1164191..1164484 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG32_RS05555 (MPG32_05555)	panD	1164494..1164844 (-)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG32_RS05560 (MPG32_05560)	-	1164834..1167056 (-)	2223	WP_245019679.1	AAA family ATPase	-
MPG32_RS05565 (MPG32_05565)	-	1167056..1167331 (-)	276	WP_245019678.1	ATP-dependent Clp protease adaptor ClpS	-
MPG32_RS05570 (MPG32_05570)	-	1167351..1167764 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39974.93 Da
• Isoelectric Point: 8.5806

>NTDB_id=666442 MPG32_RS05540 WP_245036753.1 1162135..1163190(-) (comB6) [Helicobacter pylori strain Hpfe104]
MKNDAYEVILSWFITPLTAILGHFAEFFLYTLHVQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLNHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAFSPISTSTRESTTKEKETHSPT
FKVETNQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666442 MPG32_RS05540 WP_245036753.1 1162135..1163190(-) (comB6) [Helicobacter pylori strain Hpfe104]
ATGAAAAATGACGCTTATGAGGTTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCATTTCGCTGAATT
TTTTCTCTACACTTTGCATGTACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAACCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTGGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTTTTCTCCTATTTCTACTTCTACAAGAGAAAGCACCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCAATCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952