Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG32_RS05530 Genome accession   NZ_CP094073
Coordinates   1161254..1161997 (-) Length   247 a.a.
NCBI ID   WP_000660533.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe104     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1156254..1166997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG32_RS05510 (MPG32_05510) gmd 1156522..1157667 (-) 1146 WP_031214491.1 GDP-mannose 4,6-dehydratase -
  MPG32_RS05515 (MPG32_05515) - 1157681..1159093 (-) 1413 WP_245019682.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG32_RS05520 (MPG32_05520) comB10 1159163..1160299 (-) 1137 WP_245019681.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG32_RS05525 (MPG32_05525) comB9 1160292..1161254 (-) 963 WP_245019680.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG32_RS05530 (MPG32_05530) comB8 1161254..1161997 (-) 744 WP_000660533.1 virB8 family protein Machinery gene
  MPG32_RS05535 (MPG32_05535) comB7 1161994..1162119 (-) 126 WP_001217867.1 hypothetical protein Machinery gene
  MPG32_RS05540 (MPG32_05540) comB6 1162135..1163190 (-) 1056 WP_245036753.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG32_RS05545 (MPG32_05545) - 1163196..1164191 (-) 996 WP_245037541.1 PDZ domain-containing protein -
  MPG32_RS05550 (MPG32_05550) - 1164191..1164484 (-) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPG32_RS05555 (MPG32_05555) panD 1164494..1164844 (-) 351 WP_000142212.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28670.89 Da        Isoelectric Point: 8.9546

>NTDB_id=666440 MPG32_RS05530 WP_000660533.1 1161254..1161997(-) (comB8) [Helicobacter pylori strain Hpfe104]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666440 MPG32_RS05530 WP_000660533.1 1161254..1161997(-) (comB8) [Helicobacter pylori strain Hpfe104]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAGAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAATGAAAACAAACTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCCAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968