Detailed information NTG0666349

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG46_RS00740
• Genome accession: NZ_CP094066
• Coordinates: 155073..156038 (+)
• Length: 321 a.a.
• NCBI ID: WP_245014459.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe110
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 150073..161038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG46_RS00710 (MPG46_00710)	panD	151492..151842 (+)	351	WP_000142215.1	aspartate 1-decarboxylase	-
MPG46_RS00715 (MPG46_00715)	-	151853..152146 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG46_RS00720 (MPG46_00720)	-	152146..153141 (+)	996	WP_245014458.1	PDZ domain-containing protein	-
MPG46_RS00725 (MPG46_00725)	comB6	153149..154204 (+)	1056	WP_245014788.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG46_RS00730 (MPG46_00730)	comB7	154220..154333 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
MPG46_RS00735 (MPG46_00735)	comB8	154330..155073 (+)	744	WP_058338730.1	virB8 family protein	Machinery gene
MPG46_RS00740 (MPG46_00740)	comB9	155073..156038 (+)	966	WP_245014459.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG46_RS00745 (MPG46_00745)	comB10	156031..157167 (+)	1137	WP_245014460.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG46_RS00750 (MPG46_00750)	-	157238..158650 (+)	1413	WP_245014461.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG46_RS00755 (MPG46_00755)	gmd	158664..159809 (+)	1146	WP_014533533.1	GDP-mannose 4,6-dehydratase	-
MPG46_RS00760 (MPG46_00760)	-	159802..160734 (+)	933	WP_050827672.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 37071.62 Da
• Isoelectric Point: 9.2111

>NTDB_id=666349 MPG46_RS00740 WP_245014459.1 155073..156038(+) (comB9) [Helicobacter pylori strain Hpfe110]
MRKVLYALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLENAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQRGYRALKSSQRKWYCLWICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666349 MPG46_RS00740 WP_245014459.1 155073..156038(+) (comB9) [Helicobacter pylori strain Hpfe110]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTAGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAATGCCCCCACAAACAATAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACCAATGCAATGAAAATCGTTAAAA
AGGACATTCAAAGAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTACAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTGGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.931