Detailed information NTG0666346

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG46_RS00725
• Genome accession: NZ_CP094066
• Coordinates: 153149..154204 (+)
• Length: 351 a.a.
• NCBI ID: WP_245014788.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe110
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148149..159204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG46_RS00695 (MPG46_00695)	-	148571..148984 (+)	414	WP_001023005.1	universal stress protein	-
MPG46_RS00700 (MPG46_00700)	-	149005..149280 (+)	276	WP_000784915.1	ATP-dependent Clp protease adaptor ClpS	-
MPG46_RS00705 (MPG46_00705)	-	149280..151502 (+)	2223	WP_245014457.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG46_RS00710 (MPG46_00710)	panD	151492..151842 (+)	351	WP_000142215.1	aspartate 1-decarboxylase	-
MPG46_RS00715 (MPG46_00715)	-	151853..152146 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG46_RS00720 (MPG46_00720)	-	152146..153141 (+)	996	WP_245014458.1	PDZ domain-containing protein	-
MPG46_RS00725 (MPG46_00725)	comB6	153149..154204 (+)	1056	WP_245014788.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG46_RS00730 (MPG46_00730)	comB7	154220..154333 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
MPG46_RS00735 (MPG46_00735)	comB8	154330..155073 (+)	744	WP_058338730.1	virB8 family protein	Machinery gene
MPG46_RS00740 (MPG46_00740)	comB9	155073..156038 (+)	966	WP_245014459.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG46_RS00745 (MPG46_00745)	comB10	156031..157167 (+)	1137	WP_245014460.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG46_RS00750 (MPG46_00750)	-	157238..158650 (+)	1413	WP_245014461.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39849.80 Da
• Isoelectric Point: 8.8165

>NTDB_id=666346 MPG46_RS00725 WP_245014788.1 153149..154204(+) (comB6) [Helicobacter pylori strain Hpfe110]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666346 MPG46_RS00725 WP_245014788.1 153149..154204(+) (comB6) [Helicobacter pylori strain Hpfe110]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTCTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTTATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969