Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG46_RS00735 Genome accession   NZ_CP094066
Coordinates   154330..155073 (+) Length   247 a.a.
NCBI ID   WP_058338730.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe110     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 149330..160073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG46_RS00710 (MPG46_00710) panD 151492..151842 (+) 351 WP_000142215.1 aspartate 1-decarboxylase -
  MPG46_RS00715 (MPG46_00715) - 151853..152146 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPG46_RS00720 (MPG46_00720) - 152146..153141 (+) 996 WP_245014458.1 PDZ domain-containing protein -
  MPG46_RS00725 (MPG46_00725) comB6 153149..154204 (+) 1056 WP_245014788.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG46_RS00730 (MPG46_00730) comB7 154220..154333 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  MPG46_RS00735 (MPG46_00735) comB8 154330..155073 (+) 744 WP_058338730.1 virB8 family protein Machinery gene
  MPG46_RS00740 (MPG46_00740) comB9 155073..156038 (+) 966 WP_245014459.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG46_RS00745 (MPG46_00745) comB10 156031..157167 (+) 1137 WP_245014460.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG46_RS00750 (MPG46_00750) - 157238..158650 (+) 1413 WP_245014461.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG46_RS00755 (MPG46_00755) gmd 158664..159809 (+) 1146 WP_014533533.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.91 Da        Isoelectric Point: 8.9546

>NTDB_id=666348 MPG46_RS00735 WP_058338730.1 154330..155073(+) (comB8) [Helicobacter pylori strain Hpfe110]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666348 MPG46_RS00735 WP_058338730.1 154330..155073(+) (comB8) [Helicobacter pylori strain Hpfe110]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGATGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972