Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPF94_RS00725 | Genome accession | NZ_CP094065 |
| Coordinates | 155462..156598 (+) | Length | 378 a.a. |
| NCBI ID | WP_245022207.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe112 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 150462..161598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF94_RS00690 (MPF94_00690) | panD | 150913..151263 (+) | 351 | WP_154437088.1 | aspartate 1-decarboxylase | - |
| MPF94_RS00695 (MPF94_00695) | - | 151274..151567 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPF94_RS00700 (MPF94_00700) | - | 151567..152562 (+) | 996 | WP_245022536.1 | PDZ domain-containing protein | - |
| MPF94_RS00705 (MPF94_00705) | comB6 | 152568..153626 (+) | 1059 | WP_245022205.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPF94_RS00710 (MPF94_00710) | comB7 | 153642..153767 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPF94_RS00715 (MPF94_00715) | comB8 | 153764..154507 (+) | 744 | WP_000660533.1 | virB8 family protein | Machinery gene |
| MPF94_RS00720 (MPF94_00720) | comB9 | 154507..155469 (+) | 963 | WP_245022206.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPF94_RS00725 (MPF94_00725) | comB10 | 155462..156598 (+) | 1137 | WP_245022207.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPF94_RS00730 (MPF94_00730) | - | 156668..158080 (+) | 1413 | WP_245022208.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPF94_RS00735 (MPF94_00735) | gmd | 158094..159239 (+) | 1146 | WP_031214491.1 | GDP-mannose 4,6-dehydratase | - |
| MPF94_RS00740 (MPF94_00740) | - | 159232..160164 (+) | 933 | WP_154512842.1 | GDP-L-fucose synthase | - |
| MPF94_RS00745 (MPF94_00745) | hypE | 160414..161412 (-) | 999 | WP_245022209.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42170.87 Da Isoelectric Point: 9.9837
>NTDB_id=666329 MPF94_RS00725 WP_245022207.1 155462..156598(+) (comB10) [Helicobacter pylori strain Hpfe112]
MNKWIKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKTNTTSPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWI
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWIKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKTNTTSPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWI
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666329 MPF94_RS00725 WP_245022207.1 155462..156598(+) (comB10) [Helicobacter pylori strain Hpfe112]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAATCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAAC
AAACACAACCTCTCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCTGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGATC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCTAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAATCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAAC
AAACACAACCTCTCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCTGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGATC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCTAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.238 |
100 |
0.952 |