Detailed information NTG0666328

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF94_RS00720
• Genome accession: NZ_CP094065
• Coordinates: 154507..155469 (+)
• Length: 320 a.a.
• NCBI ID: WP_245022206.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe112
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 149507..160469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF94_RS00690 (MPF94_00690)	panD	150913..151263 (+)	351	WP_154437088.1	aspartate 1-decarboxylase	-
MPF94_RS00695 (MPF94_00695)	-	151274..151567 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPF94_RS00700 (MPF94_00700)	-	151567..152562 (+)	996	WP_245022536.1	PDZ domain-containing protein	-
MPF94_RS00705 (MPF94_00705)	comB6	152568..153626 (+)	1059	WP_245022205.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF94_RS00710 (MPF94_00710)	comB7	153642..153767 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPF94_RS00715 (MPF94_00715)	comB8	153764..154507 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPF94_RS00720 (MPF94_00720)	comB9	154507..155469 (+)	963	WP_245022206.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF94_RS00725 (MPF94_00725)	comB10	155462..156598 (+)	1137	WP_245022207.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF94_RS00730 (MPF94_00730)	-	156668..158080 (+)	1413	WP_245022208.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF94_RS00735 (MPF94_00735)	gmd	158094..159239 (+)	1146	WP_031214491.1	GDP-mannose 4,6-dehydratase	-
MPF94_RS00740 (MPF94_00740)	-	159232..160164 (+)	933	WP_154512842.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36753.34 Da
• Isoelectric Point: 9.3756

>NTDB_id=666328 MPF94_RS00720 WP_245022206.1 154507..155469(+) (comB9) [Helicobacter pylori strain Hpfe112]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666328 MPF94_RS00720 WP_245022206.1 154507..155469(+) (comB9) [Helicobacter pylori strain Hpfe112]
ATGCGTAAAGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCCGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCCAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938