Detailed information NTG0666325

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPF94_RS00705
• Genome accession: NZ_CP094065
• Coordinates: 152568..153626 (+)
• Length: 352 a.a.
• NCBI ID: WP_245022205.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe112
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147568..158626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF94_RS00675 (MPF94_00675)	-	147993..148406 (+)	414	WP_245022202.1	universal stress protein	-
MPF94_RS00680 (MPF94_00680)	-	148426..148701 (+)	276	WP_245022203.1	ATP-dependent Clp protease adaptor ClpS	-
MPF94_RS00685 (MPF94_00685)	-	148701..150923 (+)	2223	WP_245022204.1	ATP-dependent Clp protease ATP-binding subunit	-
MPF94_RS00690 (MPF94_00690)	panD	150913..151263 (+)	351	WP_154437088.1	aspartate 1-decarboxylase	-
MPF94_RS00695 (MPF94_00695)	-	151274..151567 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPF94_RS00700 (MPF94_00700)	-	151567..152562 (+)	996	WP_245022536.1	PDZ domain-containing protein	-
MPF94_RS00705 (MPF94_00705)	comB6	152568..153626 (+)	1059	WP_245022205.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF94_RS00710 (MPF94_00710)	comB7	153642..153767 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPF94_RS00715 (MPF94_00715)	comB8	153764..154507 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPF94_RS00720 (MPF94_00720)	comB9	154507..155469 (+)	963	WP_245022206.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF94_RS00725 (MPF94_00725)	comB10	155462..156598 (+)	1137	WP_245022207.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF94_RS00730 (MPF94_00730)	-	156668..158080 (+)	1413	WP_245022208.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 39932.94 Da
• Isoelectric Point: 8.8165

>NTDB_id=666325 MPF94_RS00705 WP_245022205.1 152568..153626(+) (comB6) [Helicobacter pylori strain Hpfe112]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPIISTSTRESATKEKETHSP
TFKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1059 bp

>NTDB_id=666325 MPF94_RS00705 WP_245022205.1 152568..153626(+) (comB6) [Helicobacter pylori strain Hpfe112]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCTAGCGCGCTAACGGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
TTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCATTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCC
ACATTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAA
TACAAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.307	100	0.963