Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG68_RS00720 Genome accession   NZ_CP094063
Coordinates   148022..149158 (+) Length   378 a.a.
NCBI ID   WP_245026842.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe115     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143022..154158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG68_RS00685 (MPG68_00685) panD 143465..143815 (+) 351 WP_000142213.1 aspartate 1-decarboxylase -
  MPG68_RS00690 (MPG68_00690) - 143862..144119 (+) 258 WP_245027498.1 YbaB/EbfC family nucleoid-associated protein -
  MPG68_RS00695 (MPG68_00695) - 144119..145123 (+) 1005 WP_245027499.1 PDZ domain-containing protein -
  MPG68_RS00700 (MPG68_00700) comB6 145131..146186 (+) 1056 WP_245027500.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG68_RS00705 (MPG68_00705) comB7 146202..146327 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG68_RS00710 (MPG68_00710) comB8 146324..147067 (+) 744 WP_128018270.1 virB8 family protein Machinery gene
  MPG68_RS00715 (MPG68_00715) comB9 147067..148029 (+) 963 WP_245026840.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG68_RS00720 (MPG68_00720) comB10 148022..149158 (+) 1137 WP_245026842.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG68_RS00725 (MPG68_00725) - 149224..150636 (+) 1413 WP_245026844.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG68_RS00730 (MPG68_00730) gmd 150651..151796 (+) 1146 WP_245026846.1 GDP-mannose 4,6-dehydratase -
  MPG68_RS00735 (MPG68_00735) - 151789..152721 (+) 933 WP_001002433.1 GDP-L-fucose synthase -
  MPG68_RS00740 (MPG68_00740) hypE 152973..153971 (-) 999 WP_245026848.1 hydrogenase expression/formation protein HypE -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42041.63 Da        Isoelectric Point: 10.0017

>NTDB_id=666285 MPG68_RS00720 WP_245026842.1 148022..149158(+) (comB10) [Helicobacter pylori strain Hpfe115]
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDGVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAILIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPVPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=666285 MPG68_RS00720 WP_245026842.1 148022..149158(+) (comB10) [Helicobacter pylori strain Hpfe115]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGGGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTAGAGAGCGATATTTTTGCTCACATGGGCAAGGCCATCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTGTACCTAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

95.238

100

0.952