Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG68_RS00710 Genome accession   NZ_CP094063
Coordinates   146324..147067 (+) Length   247 a.a.
NCBI ID   WP_128018270.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe115     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 141324..152067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG68_RS00685 (MPG68_00685) panD 143465..143815 (+) 351 WP_000142213.1 aspartate 1-decarboxylase -
  MPG68_RS00690 (MPG68_00690) - 143862..144119 (+) 258 WP_245027498.1 YbaB/EbfC family nucleoid-associated protein -
  MPG68_RS00695 (MPG68_00695) - 144119..145123 (+) 1005 WP_245027499.1 PDZ domain-containing protein -
  MPG68_RS00700 (MPG68_00700) comB6 145131..146186 (+) 1056 WP_245027500.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG68_RS00705 (MPG68_00705) comB7 146202..146327 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG68_RS00710 (MPG68_00710) comB8 146324..147067 (+) 744 WP_128018270.1 virB8 family protein Machinery gene
  MPG68_RS00715 (MPG68_00715) comB9 147067..148029 (+) 963 WP_245026840.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG68_RS00720 (MPG68_00720) comB10 148022..149158 (+) 1137 WP_245026842.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG68_RS00725 (MPG68_00725) - 149224..150636 (+) 1413 WP_245026844.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG68_RS00730 (MPG68_00730) gmd 150651..151796 (+) 1146 WP_245026846.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28698.94 Da        Isoelectric Point: 8.9546

>NTDB_id=666283 MPG68_RS00710 WP_128018270.1 146324..147067(+) (comB8) [Helicobacter pylori strain Hpfe115]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666283 MPG68_RS00710 WP_128018270.1 146324..147067(+) (comB8) [Helicobacter pylori strain Hpfe115]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGACTGGAGAGGAATCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTGTTCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGATAAGCATTATGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGTTGGTGTATGAAAAGCGTTATAAAATTGTGCTGAGTTATTTGTTTG
ACACCCCAGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976