Detailed information NTG0666281

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG68_RS00700
• Genome accession: NZ_CP094063
• Coordinates: 145131..146186 (+)
• Length: 351 a.a.
• NCBI ID: WP_245027500.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe115
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 140131..151186

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG68_RS00670 (MPG68_00670)	-	140550..140963 (+)	414	WP_001023005.1	universal stress protein	-
MPG68_RS00675 (MPG68_00675)	-	140978..141253 (+)	276	WP_245026836.1	ATP-dependent Clp protease adaptor ClpS	-
MPG68_RS00680 (MPG68_00680)	-	141253..143475 (+)	2223	WP_245026838.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG68_RS00685 (MPG68_00685)	panD	143465..143815 (+)	351	WP_000142213.1	aspartate 1-decarboxylase	-
MPG68_RS00690 (MPG68_00690)	-	143862..144119 (+)	258	WP_245027498.1	YbaB/EbfC family nucleoid-associated protein	-
MPG68_RS00695 (MPG68_00695)	-	144119..145123 (+)	1005	WP_245027499.1	PDZ domain-containing protein	-
MPG68_RS00700 (MPG68_00700)	comB6	145131..146186 (+)	1056	WP_245027500.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG68_RS00705 (MPG68_00705)	comB7	146202..146327 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG68_RS00710 (MPG68_00710)	comB8	146324..147067 (+)	744	WP_128018270.1	virB8 family protein	Machinery gene
MPG68_RS00715 (MPG68_00715)	comB9	147067..148029 (+)	963	WP_245026840.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG68_RS00720 (MPG68_00720)	comB10	148022..149158 (+)	1137	WP_245026842.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG68_RS00725 (MPG68_00725)	-	149224..150636 (+)	1413	WP_245026844.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39955.94 Da
• Isoelectric Point: 8.8165

>NTDB_id=666281 MPG68_RS00700 WP_245027500.1 145131..146186(+) (comB6) [Helicobacter pylori strain Hpfe115]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALMFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FVIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLTTNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666281 MPG68_RS00700 WP_245027500.1 145131..146186(+) (comB6) [Helicobacter pylori strain Hpfe115]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGCGCGCTAACAGAAGCGTTAATGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGTAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCACCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.726	100	0.957