Detailed information NTG0666284

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG68_RS00715
• Genome accession: NZ_CP094063
• Coordinates: 147067..148029 (+)
• Length: 320 a.a.
• NCBI ID: WP_245026840.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe115
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 142067..153029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG68_RS00685 (MPG68_00685)	panD	143465..143815 (+)	351	WP_000142213.1	aspartate 1-decarboxylase	-
MPG68_RS00690 (MPG68_00690)	-	143862..144119 (+)	258	WP_245027498.1	YbaB/EbfC family nucleoid-associated protein	-
MPG68_RS00695 (MPG68_00695)	-	144119..145123 (+)	1005	WP_245027499.1	PDZ domain-containing protein	-
MPG68_RS00700 (MPG68_00700)	comB6	145131..146186 (+)	1056	WP_245027500.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG68_RS00705 (MPG68_00705)	comB7	146202..146327 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG68_RS00710 (MPG68_00710)	comB8	146324..147067 (+)	744	WP_128018270.1	virB8 family protein	Machinery gene
MPG68_RS00715 (MPG68_00715)	comB9	147067..148029 (+)	963	WP_245026840.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG68_RS00720 (MPG68_00720)	comB10	148022..149158 (+)	1137	WP_245026842.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG68_RS00725 (MPG68_00725)	-	149224..150636 (+)	1413	WP_245026844.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG68_RS00730 (MPG68_00730)	gmd	150651..151796 (+)	1146	WP_245026846.1	GDP-mannose 4,6-dehydratase	-
MPG68_RS00735 (MPG68_00735)	-	151789..152721 (+)	933	WP_001002433.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36815.40 Da
• Isoelectric Point: 9.4585

>NTDB_id=666284 MPG68_RS00715 WP_245026840.1 147067..148029(+) (comB9) [Helicobacter pylori strain Hpfe115]
MRKVLYALVGFLLAFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNANAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666284 MPG68_RS00715 WP_245026840.1 147067..148029(+) (comB9) [Helicobacter pylori strain Hpfe115]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGCTAGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCATCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACGCTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGCTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGATAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCCAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.944