Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MN200_RS00880 Genome accession   NZ_CP093968
Coordinates   174810..175943 (-) Length   377 a.a.
NCBI ID   WP_058868688.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 169810..180943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS00850 (MN200_00850) - 170021..170611 (-) 591 WP_058868683.1 hypothetical protein -
  MN200_RS00855 (MN200_00855) - 170744..171118 (-) 375 WP_125281518.1 RcnB family protein -
  MN200_RS00860 (MN200_00860) - 171316..171861 (-) 546 WP_242759923.1 glutathione peroxidase -
  MN200_RS00865 (MN200_00865) - 171985..172539 (-) 555 WP_005401885.1 hypothetical protein -
  MN200_RS00870 (MN200_00870) - 172875..173795 (+) 921 WP_058868687.1 DMT family transporter -
  MN200_RS00875 (MN200_00875) - 174195..174764 (-) 570 WP_010325660.1 Sua5/YciO/YrdC/YwlC family protein -
  MN200_RS00880 (MN200_00880) dprA 174810..175943 (-) 1134 WP_058868688.1 DNA-processing protein DprA Machinery gene
  MN200_RS00885 (MN200_00885) tsaP 175966..177120 (-) 1155 WP_058868689.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MN200_RS00890 (MN200_00890) def 177241..177774 (+) 534 WP_004684452.1 peptide deformylase -
  MN200_RS00895 (MN200_00895) - 177865..178302 (+) 438 WP_058868690.1 DUF2946 family protein -
  MN200_RS00900 (MN200_00900) - 178375..180420 (+) 2046 WP_058868691.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41761.37 Da        Isoelectric Point: 6.6816

>NTDB_id=666069 MN200_RS00880 WP_058868688.1 174810..175943(-) (dprA) [Acinetobacter sp. LUNF3]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNLQIWPNLGLHKSHLQRVTEIQTPAGQIKLQTLLHDV
QANCDFILLDTESHYPSQLLPYSDRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKYQRTIAVMGTGLDLTYPFQHQTLRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAKSAAEQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQETTPSASIEIPS
NLLELYNQLDWVGQNMDQLNFKLNTDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=666069 MN200_RS00880 WP_058868688.1 174810..175943(-) (dprA) [Acinetobacter sp. LUNF3]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCGAGCTTTCA
AAAGCTACAGCAGCATTTTGGCACAAGCACAAAAGCTGTTGCTGCCTCCAATCTTCAGATCTGGCCAAATCTTGGCTTAC
ACAAAAGCCATCTACAACGTGTCACAGAAATCCAAACACCTGCTGGCCAAATCAAATTACAAACTTTACTGCATGACGTC
CAAGCCAATTGTGATTTTATTTTGCTTGATACTGAAAGTCATTATCCCTCGCAGTTGCTGCCCTATTCTGACCGGCCACC
GATTTTATTTGGTCAGGGCAATCCACAAAGTTTACTCCAACCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGTCCAC
ACGGCAAACAAGTGGCTTATGACTTTGCCTATTACCTCGCCGAAAAGGGCTTTTATATTTGCAGTGGTTTGGCTGAAGGC
ATTGATGCAGCGGCACATCAGGGCGGCTTAAAATATCAACGTACCATTGCAGTGATGGGCACGGGCTTAGATCTCACTTA
TCCTTTCCAACATCAAACACTGCGTACGCAAATATTAGAAAATAATGGCTGTATCATTACTGAATTTTTACCACATACAC
CGCCTTTACAGCATAATTTTCCACGGCGAAACCGCATCGTCAGTGCATTGAGTTTAGGGGTTGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTTGGCACAGCCAAATCTGCTGCTGAACAAGGGAAAACCATTTTTGCGATTCCCGGTCATATTTA
CAGTGAACACCATCAAGGCTGTCATCAACTGATCCGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAACCACCCCAAGCGCTAGTATTGAGATCCCATCT
AATTTACTCGAACTTTATAATCAACTGGATTGGGTGGGACAAAATATGGATCAACTTAATTTCAAACTTAACACCGATAT
TGCCACACTCACCAGCCAGTTAATGGAACTGGAAATTTTGGGGCTTGCACAACAACAAGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663

  dprA Acinetobacter baumannii D1279779

65.426

99.735

0.653

  dprA Acinetobacter baylyi ADP1

60.367

100

0.61