Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   MN200_RS00885 Genome accession   NZ_CP093968
Coordinates   175966..177120 (-) Length   384 a.a.
NCBI ID   WP_058868689.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170966..182120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS00860 (MN200_00860) - 171316..171861 (-) 546 WP_242759923.1 glutathione peroxidase -
  MN200_RS00865 (MN200_00865) - 171985..172539 (-) 555 WP_005401885.1 hypothetical protein -
  MN200_RS00870 (MN200_00870) - 172875..173795 (+) 921 WP_058868687.1 DMT family transporter -
  MN200_RS00875 (MN200_00875) - 174195..174764 (-) 570 WP_010325660.1 Sua5/YciO/YrdC/YwlC family protein -
  MN200_RS00880 (MN200_00880) dprA 174810..175943 (-) 1134 WP_058868688.1 DNA-processing protein DprA Machinery gene
  MN200_RS00885 (MN200_00885) tsaP 175966..177120 (-) 1155 WP_058868689.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MN200_RS00890 (MN200_00890) def 177241..177774 (+) 534 WP_004684452.1 peptide deformylase -
  MN200_RS00895 (MN200_00895) - 177865..178302 (+) 438 WP_058868690.1 DUF2946 family protein -
  MN200_RS00900 (MN200_00900) - 178375..180420 (+) 2046 WP_058868691.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42214.14 Da        Isoelectric Point: 8.2197

>NTDB_id=666070 MN200_RS00885 WP_058868689.1 175966..177120(-) (tsaP) [Acinetobacter sp. LUNF3]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVTSTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGTGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDK

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=666070 MN200_RS00885 WP_058868689.1 175966..177120(-) (tsaP) [Acinetobacter sp. LUNF3]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCTGGCGTCACTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCTCCTGCTTTAAAAGCCAATG
CACCAAATGTTTACGTGGTGAAAAAAGGCGATACCCTTTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGTGACCGTTTATTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGCGCTGCCGATCAGCGTGTCATTGCAGG
TACAGGGCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGATGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCAAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGTAATATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTAGTGGATAAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.714

100

0.659