Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GL4_RS09070 Genome accession   NZ_AP014648
Coordinates   1960265..1960738 (+) Length   157 a.a.
NCBI ID   WP_045366811.1    Uniprot ID   A0A0A8K3F9
Organism   Methyloceanibacter caenitepidi strain Gela4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1955265..1965738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL4_RS09055 (GL4_1871) - 1956989..1958557 (-) 1569 WP_045366807.1 AAA family ATPase -
  GL4_RS09060 (GL4_1872) - 1958662..1959222 (+) 561 WP_045366809.1 DUF2585 domain-containing protein -
  GL4_RS16735 (GL4_1873) - 1959331..1959942 (-) 612 WP_052464300.1 MAPEG family protein -
  GL4_RS09070 (GL4_1874) ssb 1960265..1960738 (+) 474 WP_045366811.1 single-stranded DNA-binding protein Machinery gene
  GL4_RS09075 (GL4_1875) - 1960847..1961335 (-) 489 WP_045366813.1 bacterioferritin -
  GL4_RS09080 (GL4_1876) gyrA 1961860..1964625 (+) 2766 WP_045366815.1 DNA gyrase subunit A -
  GL4_RS16740 (GL4_1877) - 1964643..1965377 (-) 735 WP_052464302.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17246.10 Da        Isoelectric Point: 5.8297

>NTDB_id=66605 GL4_RS09070 WP_045366811.1 1960265..1960738(+) (ssb) [Methyloceanibacter caenitepidi strain Gela4]
MAGSVNKVILIGNLGADPEVRHTQDGRPIVNLRLATTESWRDKNSGERREKTEWHRVVIFSEGLARVAEQYLRKGSKVYV
EGSLQTRKWEDQSGQERYTTEVVLQGFNSTLTMLDGRQQGGGMSEGEGGGGGGDFGRTKPLSGGGSFNKELDDEIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=66605 GL4_RS09070 WP_045366811.1 1960265..1960738(+) (ssb) [Methyloceanibacter caenitepidi strain Gela4]
ATGGCCGGATCGGTCAACAAAGTCATTCTCATCGGAAACCTCGGTGCCGACCCCGAAGTGCGCCACACTCAGGACGGCCG
TCCCATCGTCAATCTGCGCCTGGCGACGACCGAGAGCTGGCGCGACAAGAACTCGGGCGAGCGCCGCGAGAAAACCGAGT
GGCACCGGGTGGTGATCTTCTCCGAAGGGCTTGCGCGGGTCGCCGAGCAATATCTGCGCAAAGGCTCGAAAGTGTATGTC
GAGGGATCGTTGCAGACCCGCAAATGGGAAGATCAGTCCGGCCAGGAACGCTACACCACCGAGGTCGTTCTGCAGGGCTT
CAATTCGACGCTCACCATGCTGGACGGACGCCAGCAGGGTGGGGGCATGAGCGAAGGCGAAGGCGGCGGCGGTGGCGGCG
ATTTCGGCCGCACCAAGCCTCTCAGTGGCGGCGGCTCGTTCAACAAGGAACTGGACGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8K3F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.405

94.268

0.522
  ssb Vibrio cholerae strain A1552

64.167

76.433

0.49
  ssb Neisseria gonorrhoeae MS11

36.111

100

0.414
  ssb Neisseria meningitidis MC58

42.336

87.261

0.369

Multiple sequence alignment