Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | MO978_RS11800 | Genome accession | NZ_CP093959 |
| Coordinates | 2326530..2327030 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain FAM 17919 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2326530..2350616 | 2326530..2327030 | within | 0 |
Gene organization within MGE regions
Location: 2326530..2350616
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MO978_RS11800 (MO978_11780) | ssb | 2326530..2327030 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| MO978_RS11805 (MO978_11785) | rpsF | 2327060..2327353 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| MO978_RS11810 (MO978_11790) | - | 2327545..2328399 (-) | 855 | WP_373961916.1 | undecaprenyl-diphosphate phosphatase | - |
| MO978_RS11815 (MO978_11795) | - | 2328922..2330388 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
| MO978_RS11820 (MO978_11800) | - | 2330461..2331832 (+) | 1372 | Protein_2293 | IS3-like element ISLla3 family transposase | - |
| MO978_RS11825 (MO978_11805) | dnaX | 2331909..2333567 (-) | 1659 | WP_137016462.1 | DNA polymerase III subunit gamma/tau | - |
| MO978_RS11830 (MO978_11810) | - | 2333616..2334257 (-) | 642 | WP_003131958.1 | phosphotransferase | - |
| MO978_RS11835 (MO978_11815) | - | 2334288..2334776 (-) | 489 | WP_003131959.1 | GAF domain-containing protein | - |
| MO978_RS11840 (MO978_11820) | - | 2334860..2335132 (+) | 273 | WP_003131960.1 | chorismate mutase | - |
| MO978_RS11845 (MO978_11825) | - | 2335220..2335666 (-) | 447 | WP_003131961.1 | hypothetical protein | - |
| MO978_RS11850 (MO978_11830) | - | 2335956..2337140 (-) | 1185 | WP_289424543.1 | site-specific integrase | - |
| MO978_RS11855 (MO978_11835) | - | 2337639..2337833 (-) | 195 | WP_058221577.1 | hypothetical protein | - |
| MO978_RS11860 (MO978_11840) | - | 2338637..2338951 (-) | 315 | WP_011835952.1 | hypothetical protein | - |
| MO978_RS11865 (MO978_11845) | - | 2339486..2339680 (-) | 195 | WP_011677061.1 | hypothetical protein | - |
| MO978_RS11870 (MO978_11850) | - | 2340316..2340507 (-) | 192 | Protein_2303 | helix-turn-helix domain-containing protein | - |
| MO978_RS11875 (MO978_11855) | - | 2340767..2340964 (+) | 198 | WP_011677058.1 | hypothetical protein | - |
| MO978_RS11880 (MO978_11860) | - | 2340968..2341249 (+) | 282 | WP_289424544.1 | hypothetical protein | - |
| MO978_RS11885 (MO978_11865) | - | 2341355..2342059 (-) | 705 | WP_050547295.1 | DUF4145 domain-containing protein | - |
| MO978_RS11890 (MO978_11870) | - | 2342137..2342322 (+) | 186 | WP_003131971.1 | helix-turn-helix domain-containing protein | - |
| MO978_RS11895 (MO978_11875) | - | 2342443..2342637 (+) | 195 | WP_014573405.1 | DUF1655 domain-containing protein | - |
| MO978_RS11900 (MO978_11880) | - | 2342642..2343250 (+) | 609 | WP_162494570.1 | hypothetical protein | - |
| MO978_RS11905 (MO978_11885) | - | 2343247..2343528 (+) | 282 | WP_023164724.1 | hypothetical protein | - |
| MO978_RS11910 (MO978_11890) | - | 2343571..2343810 (+) | 240 | WP_289424551.1 | hypothetical protein | - |
| MO978_RS11915 (MO978_11895) | - | 2343807..2344061 (+) | 255 | WP_058225808.1 | hypothetical protein | - |
| MO978_RS11920 (MO978_11900) | - | 2344058..2344252 (+) | 195 | WP_021212083.1 | hypothetical protein | - |
| MO978_RS11925 (MO978_11905) | - | 2344239..2344568 (+) | 330 | WP_058225809.1 | hypothetical protein | - |
| MO978_RS11930 (MO978_11910) | - | 2344677..2345471 (+) | 795 | WP_058225810.1 | bifunctional DNA primase/polymerase | - |
| MO978_RS11935 (MO978_11915) | - | 2345482..2347110 (+) | 1629 | WP_058225811.1 | phage/plasmid primase, P4 family | - |
| MO978_RS11940 (MO978_11920) | - | 2347328..2347510 (+) | 183 | WP_003131978.1 | hypothetical protein | - |
| MO978_RS11945 (MO978_11925) | - | 2347537..2348145 (+) | 609 | WP_137016484.1 | hypothetical protein | - |
| MO978_RS11950 (MO978_11930) | - | 2348154..2348744 (+) | 591 | WP_289424554.1 | HK97 family phage prohead protease | - |
| MO978_RS11955 (MO978_11935) | - | 2348957..2349286 (+) | 330 | WP_032944146.1 | hypothetical protein | - |
| MO978_RS11960 (MO978_11940) | - | 2349389..2349697 (+) | 309 | WP_289424555.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| MO978_RS11965 (MO978_11945) | - | 2350416..2350616 (+) | 201 | WP_003131983.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=665964 MO978_RS11800 WP_003131953.1 2326530..2327030(-) (ssb) [Lactococcus lactis strain FAM 17919]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=665964 MO978_RS11800 WP_003131953.1 2326530..2327030(-) (ssb) [Lactococcus lactis strain FAM 17919]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |