Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MOO49_RS21360 Genome accession   NZ_CP093919
Coordinates   4436586..4437122 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain ST167     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4424305..4460798 4436586..4437122 within 0


Gene organization within MGE regions


Location: 4424305..4460798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO49_RS21325 yjcB 4424305..4424586 (+) 282 WP_001295689.1 YjcB family protein -
  MOO49_RS21330 - 4424994..4425815 (+) 822 WP_001272932.1 abortive infection system antitoxin AbiGi family protein -
  MOO49_RS21335 avs4 4426354..4431117 (-) 4764 WP_000240574.1 AVAST type 4 anti-phage nuclease Avs4 -
  MOO49_RS21340 - 4431193..4431612 (-) 420 WP_001062122.1 hypothetical protein -
  MOO49_RS21345 - 4431605..4433638 (-) 2034 WP_000807722.1 hypothetical protein -
  MOO49_RS21350 - 4433655..4435193 (-) 1539 WP_001333349.1 site-specific integrase -
  MOO49_RS21355 - 4435180..4436427 (-) 1248 WP_000414651.1 site-specific integrase -
  MOO49_RS21360 ssb 4436586..4437122 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MOO49_RS21365 uvrA 4437376..4440198 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  MOO49_RS21370 yjbR 4440233..4440589 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  MOO49_RS21375 yjbQ 4440593..4441009 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MOO49_RS21380 aphA 4441120..4441833 (-) 714 WP_001226928.1 acid phosphatase AphA -
  MOO49_RS21385 yjbS 4442235..4442438 (+) 204 WP_001321562.1 protein YjbS -
  MOO49_RS21390 tyrB 4442940..4444133 (-) 1194 WP_000486985.1 aromatic amino acid transaminase -
  MOO49_RS21395 alr 4444386..4445465 (-) 1080 WP_001147328.1 alanine racemase -
  MOO49_RS21400 dnaB 4445518..4446933 (-) 1416 WP_000918363.1 replicative DNA helicase -
  MOO49_RS21405 qorA 4447016..4447999 (+) 984 WP_000235508.1 quinone oxidoreductase -
  MOO49_RS21410 pspG 4448165..4448407 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  MOO49_RS21415 dusA 4448541..4449578 (-) 1038 WP_001298868.1 tRNA dihydrouridine(20/20a) synthase DusA -
  MOO49_RS21420 yjbM 4449941..4450648 (-) 708 WP_001311303.1 DUF2713 domain-containing protein -
  MOO49_RS25260 yjbL 4450672..4450926 (-) 255 WP_000912571.1 protein YjbL -
  MOO49_RS21425 zur 4451244..4451759 (+) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  MOO49_RS21430 yjbJ 4451801..4452010 (-) 210 WP_001030593.1 CsbD family protein -
  MOO49_RS21435 dinF 4452126..4453451 (-) 1326 WP_001326646.1 MATE family efflux transporter DinF -
  MOO49_RS21440 lexA 4453524..4454132 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  MOO49_RS21445 dgkA 4454242..4454610 (-) 369 WP_000002907.1 diacylglycerol kinase -
  MOO49_RS21450 plsB 4454781..4457204 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  MOO49_RS21455 ubiA 4457359..4458231 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  MOO49_RS21460 ubiC 4458244..4458741 (-) 498 WP_001326644.1 chorismate lyase -
  MOO49_RS21465 - 4458964..4460544 (-) 1581 Protein_4225 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=665514 MOO49_RS21360 WP_000168305.1 4436586..4437122(-) (ssb) [Escherichia coli strain ST167]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=665514 MOO49_RS21360 WP_000168305.1 4436586..4437122(-) (ssb) [Escherichia coli strain ST167]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489