Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MQG38_RS07765 Genome accession   NZ_CP093913
Coordinates   1601578..1602057 (-) Length   159 a.a.
NCBI ID   WP_258248005.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 9R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1596578..1607057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG38_RS07740 - 1596941..1597333 (+) 393 WP_005544975.1 hypothetical protein -
  MQG38_RS07745 comE 1597353..1598762 (+) 1410 WP_005544978.1 type IV pilus secretin PilQ Machinery gene
  MQG38_RS07750 aroK 1598976..1599503 (+) 528 WP_005555432.1 shikimate kinase AroK -
  MQG38_RS07755 aroB 1599527..1600615 (+) 1089 WP_005544982.1 3-dehydroquinate synthase -
  MQG38_RS07760 - 1600618..1601472 (+) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  MQG38_RS07765 ssb 1601578..1602057 (-) 480 WP_258248005.1 single-stranded DNA-binding protein Machinery gene
  MQG38_RS07770 uvrA 1602228..1605059 (+) 2832 WP_005544988.1 excinuclease ABC subunit UvrA -
  MQG38_RS07775 - 1605128..1605538 (-) 411 WP_258248006.1 MerR family transcriptional regulator -
  MQG38_RS07780 - 1605647..1605958 (-) 312 WP_005544992.1 DciA family protein -
  MQG38_RS07785 secM 1606050..1606367 (+) 318 WP_005544997.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17875.66 Da        Isoelectric Point: 5.3111

>NTDB_id=665467 MQG38_RS07765 WP_258248005.1 1601578..1602057(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 9R]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITIATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYTPTSQPSYPNQQQSAPRSAPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=665467 MQG38_RS07765 WP_258248005.1 1601578..1602057(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAATATCACCATTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGTGAACGCCGCGAAGTCACCGAATGGC
ACCGCATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGCGCCGATCGCCAATCCGGCGGAAACTACACACCGACATCCCAACCAAGTTATCCAAACCAACAACAAA
GCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.444

100

0.786
  ssb Vibrio cholerae strain A1552

58.046

100

0.635
  ssb Neisseria meningitidis MC58

46.591

100

0.516
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.516