Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MQG44_RS10110 Genome accession   NZ_CP093912
Coordinates   2044466..2044918 (-) Length   150 a.a.
NCBI ID   WP_005550263.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 14R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2039466..2049918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG44_RS10085 - 2039623..2040750 (-) 1128 WP_005539200.1 DUF4123 domain-containing protein -
  MQG44_RS10090 - 2040780..2040959 (-) 180 WP_187374682.1 hypothetical protein -
  MQG44_RS10095 - 2041128..2041817 (-) 690 WP_005594882.1 A24 family peptidase -
  MQG44_RS10100 pilC 2041814..2043037 (-) 1224 WP_061866560.1 type II secretion system F family protein Machinery gene
  MQG44_RS10105 pilB 2043030..2044439 (-) 1410 WP_005540457.1 GspE/PulE family protein Machinery gene
  MQG44_RS10110 pilA 2044466..2044918 (-) 453 WP_005550263.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MQG44_RS10115 ampD 2045040..2045594 (+) 555 WP_005540460.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MQG44_RS10120 nanQ 2046060..2046533 (-) 474 WP_005594879.1 N-acetylneuraminate anomerase -
  MQG44_RS10125 pnp 2046827..2048956 (+) 2130 WP_032997160.1 polyribonucleotide nucleotidyltransferase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15503.95 Da        Isoelectric Point: 9.4349

>NTDB_id=665448 MQG44_RS10110 WP_005550263.1 2044466..2044918(-) (pilA) [Aggregatibacter actinomycetemcomitans strain 14R]
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAATGVSWNAACGNNAGIFPAGFCS

Nucleotide


Download         Length: 453 bp        

>NTDB_id=665448 MQG44_RS10110 WP_005550263.1 2044466..2044918(-) (pilA) [Aggregatibacter actinomycetemcomitans strain 14R]
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCGGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCACCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGGCATTTTCCCGGCAGGTTTCTGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

63.043

92

0.58
  pilA Haemophilus influenzae Rd KW20

59.028

96

0.567
  pilA Glaesserella parasuis strain SC1401

53.846

95.333

0.513