Detailed information NTG0665446

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: MQG44_RS10100
• Genome accession: NZ_CP093912
• Coordinates: 2041814..2043037 (-)
• Length: 407 a.a.
• NCBI ID: WP_061866560.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain 14R
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2036814..2048037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MQG44_RS10080	-	2037480..2039600 (-)	2121	WP_258305176.1	hypothetical protein	-
MQG44_RS10085	-	2039623..2040750 (-)	1128	WP_005539200.1	DUF4123 domain-containing protein	-
MQG44_RS10090	-	2040780..2040959 (-)	180	WP_187374682.1	hypothetical protein	-
MQG44_RS10095	-	2041128..2041817 (-)	690	WP_005594882.1	A24 family peptidase	-
MQG44_RS10100	pilC	2041814..2043037 (-)	1224	WP_061866560.1	type II secretion system F family protein	Machinery gene
MQG44_RS10105	pilB	2043030..2044439 (-)	1410	WP_005540457.1	GspE/PulE family protein	Machinery gene
MQG44_RS10110	pilA	2044466..2044918 (-)	453	WP_005550263.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
MQG44_RS10115	ampD	2045040..2045594 (+)	555	WP_005540460.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
MQG44_RS10120	nanQ	2046060..2046533 (-)	474	WP_005594879.1	N-acetylneuraminate anomerase	-

Sequence

Protein

• Length: 407 a.a.
• Molecular weight: 46195.68 Da
• Isoelectric Point: 10.3517

>NTDB_id=665446 MQG44_RS10100 WP_061866560.1 2041814..2043037(-) (pilC) [Aggregatibacter actinomycetemcomitans strain 14R]
MTKLKLFQWRGVNRLQQKQKGLIVAETEVMAQQQLLSRGLQNIKLQQNWQFSHKPKNADICTLLSQLATLLRAAVPLKNS
LQILLQNCTNIALNRWLRCLLQEIESGLAFSQALEQQGLYLTYQERQLIQVGEMTGKLAAVCHEIAQHKQQALALQRKIQ
KILLYPLLVLGISLILTALLLLFIVPQFAAMYDSSNAQLPVFTQVLLALSQGLQDYWFALLMFIALTVALIRFRLKHSPW
LNRQKNRLINSIPLLNRIVQLSRLVGFSRSLFLMLQAGIPLNQALQSFLPKQQSWQSKPQQQGDWLLITEVQSALHWIQQ
GYPFSASVSGQIFPPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQMLEPLLMVIIGGLIGLIMLGMYLPIF
NMGSLVQ

Nucleotide

• Length: 1224 bp

>NTDB_id=665446 MQG44_RS10100 WP_061866560.1 2041814..2043037(-) (pilC) [Aggregatibacter actinomycetemcomitans strain 14R]
ATGACTAAATTGAAACTGTTTCAATGGCGCGGCGTTAATCGCTTGCAGCAAAAACAAAAAGGCTTAATCGTGGCGGAAAC
GGAGGTGATGGCACAACAACAGCTGCTTTCACGTGGGTTGCAAAACATCAAATTGCAACAAAACTGGCAATTCAGCCACA
AACCGAAAAATGCCGACATCTGCACCCTGCTTTCCCAACTGGCGACGCTATTACGAGCCGCCGTGCCGCTGAAAAACAGC
CTGCAAATTTTATTGCAAAATTGTACCAATATTGCGTTGAATCGCTGGCTACGCTGCTTGCTACAGGAGATTGAAAGCGG
CTTGGCATTTTCTCAAGCATTGGAACAACAAGGGTTATACTTAACCTATCAGGAACGCCAACTGATTCAGGTGGGTGAAA
TGACAGGCAAACTTGCCGCCGTCTGTCATGAAATCGCACAACATAAACAACAGGCGCTGGCGTTGCAGCGTAAAATTCAG
AAAATCCTGCTTTATCCGTTGCTGGTGCTCGGAATCTCATTGATTTTGACCGCACTTTTATTGCTGTTCATCGTGCCGCA
ATTTGCCGCCATGTATGACAGCAGCAACGCGCAACTGCCCGTGTTCACGCAGGTTTTACTAGCCCTTTCCCAAGGCTTGC
AGGATTATTGGTTCGCGCTACTCATGTTTATTGCGCTGACCGTGGCGTTAATTCGCTTTCGCCTCAAACATTCGCCTTGG
CTTAACCGACAAAAAAACCGGCTGATTAACAGTATTCCGTTGCTTAATCGTATCGTACAACTCTCCCGCCTGGTGGGATT
CAGTCGCAGCTTGTTTTTGATGTTACAGGCAGGTATTCCGCTGAATCAGGCGCTGCAATCTTTTCTACCGAAGCAACAAA
GCTGGCAAAGCAAACCGCAACAGCAAGGGGATTGGCTATTAATTACAGAAGTGCAATCGGCACTGCATTGGATTCAACAA
GGCTATCCGTTCTCCGCCAGCGTAAGCGGACAAATCTTCCCGCCGGCGGCACAGCAAATGCTGCAAGTCGGCGAACAAAG
CGGTCAATTGCCGAAAATGCTGCAATTTATCGCCAACGATCATCAGCAACAGTTGGATCACCAAATCGATCTGCTGTCAC
AAATGCTGGAACCGTTGTTGATGGTGATTATCGGCGGGCTGATCGGCTTGATTATGCTCGGTATGTATTTACCGATTTTC
AACATGGGCTCGCTGGTGCAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-398)

• Type II secretion system (T2SS), protein F (T2SSF) (64-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Haemophilus influenzae Rd KW20	63.145	100	0.631
pilC	Haemophilus influenzae 86-028NP	62.899	100	0.629
pilC	Glaesserella parasuis strain SC1401	39.312	100	0.393