Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MQG44_RS08210 Genome accession   NZ_CP093912
Coordinates   1682591..1683076 (-) Length   161 a.a.
NCBI ID   WP_014702365.1    Uniprot ID   A0A142G044
Organism   Aggregatibacter actinomycetemcomitans strain 14R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1677591..1688076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG44_RS08195 - 1679095..1679283 (-) 189 WP_005543949.1 hypothetical protein -
  MQG44_RS08200 - 1679450..1681621 (+) 2172 WP_005543943.1 YecA family protein -
  MQG44_RS08205 - 1681835..1682401 (+) 567 WP_005543941.1 efflux RND transporter permease subunit -
  MQG44_RS08210 ssb 1682591..1683076 (-) 486 WP_014702365.1 single-stranded DNA-binding protein Machinery gene
  MQG44_RS08215 uvrA 1683246..1686077 (+) 2832 WP_005543937.1 excinuclease ABC subunit UvrA -
  MQG44_RS08220 - 1686155..1686529 (+) 375 WP_061866548.1 transposase -
  MQG44_RS08225 - 1686571..1686828 (+) 258 WP_145916692.1 IS3 family transposase -
  MQG44_RS08230 - 1686822..1687331 (+) 510 WP_235605831.1 IS3 family transposase -
  MQG44_RS08235 - 1687408..1687818 (-) 411 WP_005589530.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17972.83 Da        Isoelectric Point: 5.3111

>NTDB_id=665437 MQG44_RS08210 WP_014702365.1 1682591..1683076(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 14R]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYAPAAVAQPSYPSQQQSAPRSAPASKPTAEAPMDNFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=665437 MQG44_RS08210 WP_014702365.1 1682591..1683076(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 14R]
ATGGCTGGAGTAAATAAAGTGATTATCGTCGGTAATTTGGGTAACGATCCTGAAATCCGCACCATGCCGAATGGCGAAGC
CGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAATACCGGCGAACGCCGCGAAGTCACTGAATGGC
ACCGTATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGCTCGAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAAGGCGACGTTTTACAAAT
GTTAGACAGCCGTGCCGATCGCCAATCCGGCGGAAACTACGCACCGGCTGCAGTTGCCCAACCAAGTTATCCAAGCCAAC
AACAAAGCGCCCCACGCAGCGCGCCGGCAAGTAAACCTACCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G044

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70.556

100

0.789
  ssb Vibrio cholerae strain A1552

57.803

100

0.621
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.509
  ssb Neisseria meningitidis MC58

45.763

100

0.503