Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SCSC_RS01370 Genome accession   NZ_AP014647
Coordinates   265068..265559 (+) Length   163 a.a.
NCBI ID   WP_003030533.1    Uniprot ID   F9PAY8
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 260068..270559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS01340 (SCSC_0276) - 260603..261442 (+) 840 WP_006269794.1 Cof-type HAD-IIB family hydrolase -
  SCSC_RS01345 - 261454..262062 (+) 609 Protein_244 histidine phosphatase family protein -
  SCSC_RS01350 (SCSC_0279) - 262143..262571 (-) 429 WP_020997594.1 hypothetical protein -
  SCSC_RS01355 - 262546..263406 (-) 861 WP_052029540.1 phosphodiester glycosidase family protein -
  SCSC_RS01360 - 263447..264489 (-) 1043 Protein_247 bifunctional glycosyltransferase family 2/GtrA family protein -
  SCSC_RS01365 (SCSC_0281) rpsF 264766..265056 (+) 291 WP_003074536.1 30S ribosomal protein S6 -
  SCSC_RS01370 (SCSC_0282) ssb 265068..265559 (+) 492 WP_003030533.1 single-stranded DNA-binding protein Machinery gene
  SCSC_RS01375 (SCSC_0283) rpsR 265596..265835 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SCSC_RS01380 (SCSC_0284) - 266009..266686 (-) 678 WP_006269791.1 DUF1129 family protein -
  SCSC_RS01385 (SCSC_0285) - 266702..267646 (-) 945 WP_003070861.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18157.86 Da        Isoelectric Point: 4.9008

>NTDB_id=66541 SCSC_RS01370 WP_003030533.1 265068..265559(+) (ssb) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGNSSSNFGNATSANQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=66541 SCSC_RS01370 WP_003030533.1 265068..265559(+) (ssb) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAGCTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTCAATCGCAATTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTCATTAACGTTGTAATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCGCTTATCGGAATTACTGGTCGGATTCAGACACGT
AACTACGAAAACCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCGGATAATTTCCAACTATTGGAAAGCCGTGC
TAGTCGTGAAGGTCAATCTTCTGGTGGCTATGCTTCCAACAACTTCGGAAATTCATCTTCCAATTTTGGTAACGCAACTT
CTGCCAACCAAGTACCTAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9PAY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.523

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment