Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MQG37_RS00470 Genome accession   NZ_CP093911
Coordinates   94539..94991 (+) Length   150 a.a.
NCBI ID   WP_005586498.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 16R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 89539..99991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG37_RS00455 pnp 90496..92625 (-) 2130 WP_032997542.1 polyribonucleotide nucleotidyltransferase -
  MQG37_RS00460 nanQ 92919..93389 (+) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  MQG37_RS00465 ampD 93863..94417 (-) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MQG37_RS00470 pilA 94539..94991 (+) 453 WP_005586498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MQG37_RS00475 pilB 95018..96427 (+) 1410 WP_005547542.1 GspE/PulE family protein Machinery gene
  MQG37_RS00480 pilC 96420..97643 (+) 1224 WP_005547544.1 type II secretion system F family protein Machinery gene
  MQG37_RS00485 - 97640..98329 (+) 690 WP_005547547.1 A24 family peptidase -
  MQG37_RS00490 coaE 98379..99002 (+) 624 WP_005547548.1 dephospho-CoA kinase -
  MQG37_RS00495 yacG 98992..99204 (+) 213 WP_005547550.1 DNA gyrase inhibitor YacG -
  MQG37_RS00500 - 99204..99476 (+) 273 WP_005547552.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15547.96 Da        Isoelectric Point: 9.1384

>NTDB_id=665406 MQG37_RS00470 WP_005586498.1 94539..94991(+) (pilA) [Aggregatibacter actinomycetemcomitans strain 16R]
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAASGVSWNAACGNNADIFPAGFCS

Nucleotide


Download         Length: 453 bp        

>NTDB_id=665406 MQG37_RS00470 WP_005586498.1 94539..94991(+) (pilA) [Aggregatibacter actinomycetemcomitans strain 16R]
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCAGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCAGCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGACATTTTCCCGGCAGGTTTCTGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

62.319

92

0.573
  pilA Haemophilus influenzae Rd KW20

59.028

96

0.567
  pilA Glaesserella parasuis strain SC1401

53.846

95.333

0.513