Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MQG43_RS02975 Genome accession   NZ_CP093910
Coordinates   586737..587216 (-) Length   159 a.a.
NCBI ID   WP_005544986.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 27R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 581737..592216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG43_RS02950 - 582100..582492 (+) 393 WP_005544975.1 hypothetical protein -
  MQG43_RS02955 comE 582512..583921 (+) 1410 WP_005544978.1 type IV pilus secretin PilQ Machinery gene
  MQG43_RS02960 aroK 584135..584662 (+) 528 WP_005555432.1 shikimate kinase AroK -
  MQG43_RS02965 aroB 584686..585774 (+) 1089 WP_005544982.1 3-dehydroquinate synthase -
  MQG43_RS02970 - 585777..586631 (+) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  MQG43_RS02975 ssb 586737..587216 (-) 480 WP_005544986.1 single-stranded DNA-binding protein Machinery gene
  MQG43_RS02980 uvrA 587387..590218 (+) 2832 WP_005544988.1 excinuclease ABC subunit UvrA -
  MQG43_RS02985 - 590287..590697 (-) 411 WP_005544990.1 MerR family transcriptional regulator -
  MQG43_RS02990 - 590806..591117 (-) 312 WP_005544992.1 DciA family protein -
  MQG43_RS02995 secM 591209..591526 (+) 318 WP_005544997.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17861.64 Da        Isoelectric Point: 5.3111

>NTDB_id=665394 MQG43_RS02975 WP_005544986.1 586737..587216(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 27R]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYTPTSQPSYPNQQQSAPRSAPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=665394 MQG43_RS02975 WP_005544986.1 586737..587216(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 27R]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAATATCACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGTGAACGCCGCGAAGTCACCGAATGGC
ACCGCATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGCGCCGATCGCCAATCCGGCGGAAACTACACACCGACATCCCAACCAAGTTATCCAAACCAACAACAAA
GCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70

100

0.792
  ssb Vibrio cholerae strain A1552

57.471

100

0.629
  ssb Neisseria meningitidis MC58

47.159

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.522