Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MOW04_RS21070 Genome accession   NZ_CP093546
Coordinates   4074585..4075103 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. K1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4069585..4080103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW04_RS21040 - 4070088..4071443 (+) 1356 WP_029318525.1 MFS transporter -
  MOW04_RS21045 - 4071477..4072031 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  MOW04_RS21050 - 4072049..4072429 (-) 381 WP_144500413.1 VOC family protein -
  MOW04_RS21055 ccpB 4072485..4073420 (-) 936 WP_163130465.1 transcriptional regulator CcpB -
  MOW04_RS21060 xth 4073479..4074237 (-) 759 WP_163130468.1 exodeoxyribonuclease III -
  MOW04_RS21065 rpsR 4074302..4074541 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  MOW04_RS21070 ssbA 4074585..4075103 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  MOW04_RS21075 rpsF 4075144..4075431 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  MOW04_RS21080 ychF 4075542..4076642 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  MOW04_RS21085 - 4076769..4078772 (-) 2004 WP_046381481.1 molybdopterin-dependent oxidoreductase -
  MOW04_RS21090 - 4078823..4079029 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=665184 MOW04_RS21070 WP_003219228.1 4074585..4075103(-) (ssbA) [Bacillus sp. K1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=665184 MOW04_RS21070 WP_003219228.1 4074585..4075103(-) (ssbA) [Bacillus sp. K1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378