Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG393_RS21905 Genome accession   NZ_CP108677
Coordinates   4916414..4917091 (+) Length   225 a.a.
NCBI ID   WP_327376376.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01216     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4911414..4922091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG393_RS21875 (OG393_21910) - 4911773..4912861 (-) 1089 WP_327376372.1 acyltransferase family protein -
  OG393_RS21880 (OG393_21915) - 4913214..4913408 (+) 195 WP_327376373.1 hypothetical protein -
  OG393_RS21895 (OG393_21930) tig 4914122..4915516 (+) 1395 WP_327376374.1 trigger factor -
  OG393_RS21900 (OG393_21935) clpP 4915750..4916367 (+) 618 WP_327376375.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG393_RS21905 (OG393_21940) clpP 4916414..4917091 (+) 678 WP_327376376.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG393_RS21910 (OG393_21945) clpX 4917246..4918529 (+) 1284 WP_147978018.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG393_RS21915 (OG393_21950) - 4918807..4919781 (-) 975 WP_327376377.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24486.89 Da        Isoelectric Point: 4.5930

>NTDB_id=665002 OG393_RS21905 WP_327376376.1 4916414..4917091(+) (clpP) [Streptomyces sp. NBC_01216]
MVNTPMTPNFSASGLYTGAPVDNRYVVPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDL
EIAANEILRMRTQLEEMLAKHSSTPIEKIRDDIERDKILTAEEALAYGLVDQIVSTRKSTAASAA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=665002 OG393_RS21905 WP_327376376.1 4916414..4917091(+) (clpP) [Streptomyces sp. NBC_01216]
ATGGTGAACACCCCAATGACCCCCAACTTCTCCGCGAGCGGCCTTTACACCGGCGCCCCGGTGGACAACCGGTACGTCGT
CCCGCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAAGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCACAGCTCCTCTGCCTGGAGTCGATGGACCCGGAC
CGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACCATGCAGTTCGT
GAAGCCGGACATCCAGACGGTCTGCATGGGTCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGCACCCCCGGCA
AGAGGATGGCCCTGCCGAACGCCCGTGTGCTGATCCACCAGCCCTCCGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTG
GAGATCGCGGCCAACGAGATCCTGCGCATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCTCGACGCCGATCGA
GAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGAAGCCCTCGCGTACGGTCTTGTCGACCAGATCG
TCTCGACCCGCAAGAGCACGGCCGCCTCGGCAGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.444

0.44
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.556

0.418
  clpP Streptococcus thermophilus LMD-9

45.876

86.222

0.396
  clpP Streptococcus pyogenes JRS4

45.876

86.222

0.396
  clpP Streptococcus pyogenes MGAS315

45.876

86.222

0.396
  clpP Streptococcus thermophilus LMG 18311

45.876

86.222

0.396
  clpP Streptococcus mutans UA159

46.316

84.444

0.391
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

84.889

0.391
  clpP Streptococcus pneumoniae R6

45.078

85.778

0.387
  clpP Streptococcus pneumoniae TIGR4

45.078

85.778

0.387
  clpP Streptococcus pneumoniae D39

45.078

85.778

0.387
  clpP Streptococcus pneumoniae Rx1

45.078

85.778

0.387
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

84.889

0.382