Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   MO330_RS15735 Genome accession   NZ_CP093446
Coordinates   3597194..3598252 (-) Length   352 a.a.
NCBI ID   WP_009579136.1    Uniprot ID   A0A1M4ICA6
Organism   Xanthomonas translucens strain CIX303     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3592194..3603252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO330_RS15715 (MO330_15690) - 3593328..3595229 (-) 1902 WP_038239345.1 type IV pilus secretin PilQ family protein -
  MO330_RS15720 (MO330_15695) - 3595250..3595774 (-) 525 WP_170874096.1 pilus assembly protein PilP -
  MO330_RS15725 (MO330_15700) - 3595786..3596460 (-) 675 WP_206710305.1 type 4a pilus biogenesis protein PilO -
  MO330_RS15730 (MO330_15705) - 3596457..3597194 (-) 738 WP_108084713.1 PilN domain-containing protein -
  MO330_RS15735 (MO330_15710) pilM 3597194..3598252 (-) 1059 WP_009579136.1 pilus assembly protein PilM Machinery gene
  MO330_RS15740 (MO330_15715) - 3598469..3600898 (+) 2430 WP_003471537.1 penicillin-binding protein 1A -
  MO330_RS15745 (MO330_15720) - 3601090..3601737 (+) 648 WP_003471539.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37681.36 Da        Isoelectric Point: 4.4880

>NTDB_id=664724 MO330_RS15735 WP_009579136.1 3597194..3598252(-) (pilM) [Xanthomonas translucens strain CIX303]
MGLIPKSQQPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRARHAAAA
VAGSAVITKLIPMPAELDESELEAQVELEAVNYIPYPIEEVNLDFEVLGIIPNNPEMVQVLLAASRSENVELRQSALELG
GLIAKVMDVEAFAVENAFALVASELPVAADGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYAIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=664724 MO330_RS15735 WP_009579136.1 3597194..3598252(-) (pilM) [Xanthomonas translucens strain CIX303]
GTGGGGCTTATCCCAAAGAGTCAGCAACCGCTGATCGGTGTCGATATCAGTTCGACTGCGGTCAAACTGTTGCAGCTGTC
GCGTAGCGGCAATCGGTTCCGCGTAGAGCACTATGCCGTGGAACCCCTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAAGCCGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGTTCCGGTACCCGCGCCAGGCATGCCGCGGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGAACTGGACGAGAGCGAACTGGAAGCGCAGGTCGA
GTTGGAGGCGGTCAACTACATCCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGCTGGGGATCATCCCCAACA
ATCCGGAGATGGTGCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAGCTCGGC
GGCTTGATCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGCTGGTTGCCAGCGAGTTGCCGGT
GGCCGCCGACGGCGTGGTCGCCCTGGTCGATATCGGCGCCACCATGACCACGCTCAACGTGCTGCGCGGCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGCGATCGAGGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAACCGGGTCGACCACATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGGCCGGGTTGCCGGAGATGGTCGAGGAACAACTGGGGGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTCCAGGCGCATGCGCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4ICA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50

99.432

0.497
  pilM Legionella pneumophila strain ERS1305867

46.286

99.432

0.46