Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MO330_RS13335 Genome accession   NZ_CP093446
Coordinates   3046817..3047344 (-) Length   175 a.a.
NCBI ID   WP_009592098.1    Uniprot ID   A0A1C3TLC6
Organism   Xanthomonas translucens strain CIX303     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3041817..3052344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO330_RS13320 (MO330_13320) - 3043209..3044471 (-) 1263 WP_230811676.1 prolyl oligopeptidase family serine peptidase -
  MO330_RS13325 (MO330_13325) - 3044908..3045171 (+) 264 WP_004426112.1 helix-turn-helix domain-containing protein -
  MO330_RS13330 (MO330_13330) - 3045464..3046540 (+) 1077 WP_241751850.1 HipA domain-containing protein -
  MO330_RS13335 (MO330_13335) ssb 3046817..3047344 (-) 528 WP_009592098.1 single-stranded DNA-binding protein Machinery gene
  MO330_RS13340 (MO330_13340) - 3047536..3048534 (+) 999 WP_003473510.1 polyprenyl synthetase family protein -
  MO330_RS13345 (MO330_13345) - 3048749..3049546 (-) 798 WP_003478241.1 dienelactone hydrolase family protein -
  MO330_RS13350 (MO330_13350) murD 3049761..3051194 (-) 1434 WP_058363184.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18799.72 Da        Isoelectric Point: 5.3242

>NTDB_id=664718 MO330_RS13335 WP_009592098.1 3046817..3047344(-) (ssb) [Xanthomonas translucens strain CIX303]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGREGGGGGAGMGGDRPQRAAAPRQERPNQGGGGQGGGGQDYAPRRQQPAPQ
QSAPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=664718 MO330_RS13335 WP_009592098.1 3046817..3047344(-) (ssb) [Xanthomonas translucens strain CIX303]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGACCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTGGGCGGCCGCGAAGGCGGCGGCGGCGGTGCCGGCATGGGCGGCGATCGCCCGCAGCGTGCGGCCGCGCCGCGCCAGG
AACGCCCGAACCAGGGCGGCGGCGGGCAGGGCGGCGGTGGCCAGGATTATGCGCCGCGCCGGCAACAGCCGGCGCCGCAG
CAGTCCGCGCCGATGGACGATTTCGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3TLC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.263

100

0.491
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.474
  ssb Neisseria meningitidis MC58

45.506

100

0.463