Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MOQ58_RS26385 Genome accession   NZ_CP093428
Coordinates   5781533..5782057 (-) Length   174 a.a.
NCBI ID   WP_008041307.1    Uniprot ID   J2UD93
Organism   Pseudomonas migulae strain 8R6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5776533..5787057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOQ58_RS26365 (MOQ58_26325) - 5776703..5777131 (+) 429 WP_008030949.1 DUF350 domain-containing protein -
  MOQ58_RS26370 (MOQ58_26330) - 5777150..5777863 (+) 714 WP_280162328.1 DUF1190 domain-containing protein -
  MOQ58_RS26375 (MOQ58_26335) - 5777876..5779033 (+) 1158 WP_280162329.1 glutathionylspermidine synthase family protein -
  MOQ58_RS26380 (MOQ58_26340) - 5779190..5781394 (+) 2205 WP_280162330.1 OsmC domain/YcaO domain-containing protein -
  MOQ58_RS26385 (MOQ58_26345) ssb 5781533..5782057 (-) 525 WP_008041307.1 single-stranded DNA-binding protein Machinery gene
  MOQ58_RS26390 (MOQ58_26350) - 5782067..5783464 (-) 1398 WP_008030907.1 MFS transporter -
  MOQ58_RS26395 (MOQ58_26355) uvrA 5783656..5786490 (+) 2835 WP_280162331.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19299.44 Da        Isoelectric Point: 5.9314

>NTDB_id=664666 MOQ58_RS26385 WP_008041307.1 5781533..5782057(-) (ssb) [Pseudomonas migulae strain 8R6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQQAPRPQQSAPQQSRPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=664666 MOQ58_RS26385 WP_008041307.1 5781533..5782057(-) (ssb) [Pseudomonas migulae strain 8R6]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCGGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAACAACTACCAGCAGTCCGCTCCGGCTC
CACGCCAGCAGCAGGCGCCGCGCCCGCAGCAGTCGGCACCGCAACAGTCGCGTCCGGCTCCACAGCAGGCCGCTCCTCAG
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2UD93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.609

100

0.609
  ssb Glaesserella parasuis strain SC1401

48.634

100

0.511
  ssb Neisseria meningitidis MC58

46.667

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.477