Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OG596_RS28900 Genome accession   NZ_CP108654
Coordinates   6405253..6407340 (-) Length   695 a.a.
NCBI ID   WP_405391509.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6400253..6412340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS28880 (OG596_28815) pgl 6400755..6401537 (-) 783 WP_405391505.1 6-phosphogluconolactonase -
  OG596_RS28885 (OG596_28820) opcA 6401534..6402565 (-) 1032 WP_405391506.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  OG596_RS28890 (OG596_28825) zwf 6402562..6404094 (-) 1533 WP_405391507.1 glucose-6-phosphate dehydrogenase -
  OG596_RS28895 (OG596_28830) tal 6404100..6405218 (-) 1119 WP_405391508.1 transaldolase -
  OG596_RS28900 (OG596_28835) recP/tkt 6405253..6407340 (-) 2088 WP_405391509.1 transketolase Machinery gene
  OG596_RS28905 (OG596_28840) - 6407626..6408579 (+) 954 WP_405391510.1 heme o synthase -
  OG596_RS28910 (OG596_28845) - 6408680..6409042 (+) 363 WP_405391511.1 hypothetical protein -
  OG596_RS28915 (OG596_28850) - 6409130..6410110 (-) 981 WP_405391512.1 COX15/CtaA family protein -
  OG596_RS28920 (OG596_28855) - 6410197..6410964 (-) 768 WP_405391513.1 ABC transporter permease -
  OG596_RS28925 (OG596_28860) - 6410961..6411887 (-) 927 WP_405391514.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74550.14 Da        Isoelectric Point: 4.9159

>NTDB_id=664539 OG596_RS28900 WP_405391509.1 6405253..6407340(-) (recP/tkt) [Streptomyces sp. NBC_01102]
MSTKPTTTDLQWTELDQRAVDTVRVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADADWTGRDRFVLSAGHSS
LTLYIQLYLAGYGLELDDLKAFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAATGTSPF
DHTVWVVAGDGCLQEGISAEASSLAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTLKRYESYGWHVQRVEQSPSGDLDP
EGLYNALQAAKAETERPSFIAARSIIAWPAPNAQNTEAAHGSALGDEEIAATKRVLGFDPEKTFEVSDEVISHTREALDR
GREAKAEWEKSLAAWRTANPERAAEFDRISAGELPEGWEDKLPVFEAGHSVATRAASGKVLQALGGVIPELWGGSADLAG
SNNTTIDKTSSFLPVGNPLPEADPYGRTIHFGIREHSMAAAMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHIASLRAIPGLNVVRPADANETTIAWREILGRGKKDFGRSAPHGLALTRQGVPTYPANE
DAAKGGYVLFDAEGGEPQVVLIGTGSEVQLAVEARDELQAAGVPTRVVSVPCVEWFEEQDQAYKDSVLPPSVKARVAVEA
GIGLTWHRYVGDAGRIVSLEHFGASADAKVLFREFGFTAEHVAAAARESLAAAAR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=664539 OG596_RS28900 WP_405391509.1 6405253..6407340(-) (recP/tkt) [Streptomyces sp. NBC_01102]
GTGAGCACCAAGCCGACCACCACAGACCTCCAGTGGACCGAATTGGACCAGCGGGCCGTGGACACTGTCCGCGTCCTCGC
CGCGGACGCCGTACAGAAGGTCGGAAACGGCCACCCGGGTACGGCGATGAGCCTGGCTCCTGCTGCGTACACCCTCTTCC
AGAAGGTGATGCGCCATGACCCGGCGGACGCGGACTGGACCGGCCGGGACCGGTTCGTACTCTCTGCCGGCCACTCCAGC
CTGACGCTGTACATCCAGCTCTACCTGGCCGGATACGGCCTGGAGCTGGACGACCTCAAGGCGTTCCGCACCTGGGGCTC
CAAGACCCCGGGTCACCCGGAGTACGGCCACACCACCGGTGTCGAGACGACGACCGGCCCGCTGGGCCAGGGTGTCGCCA
ACGCCGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCGGAGGCGGCCACCGGCACCTCCCCGTTC
GACCACACCGTCTGGGTCGTCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCGCCGAGGCGTCCTCGCTGGCCGGCCA
CCAGAAGCTCGGCAACCTGGTCCTGCTGTGGGACGACAACCACATCTCGATCGAGGGCGACACGGAGACCGCGGTCTCCG
AGGACACCCTCAAGCGCTACGAGTCCTACGGCTGGCACGTCCAGCGGGTGGAGCAGTCGCCCTCCGGCGACCTGGACCCC
GAGGGCCTCTACAACGCACTGCAGGCCGCCAAGGCCGAGACGGAGCGCCCGTCGTTCATCGCGGCCCGTTCGATCATCGC
CTGGCCCGCCCCGAACGCCCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGACGAGGAGATCGCGGCCACCAAGC
GCGTCCTCGGCTTCGATCCGGAGAAGACCTTCGAGGTCTCCGACGAGGTCATCTCGCACACCCGTGAGGCCCTGGACCGC
GGCCGTGAGGCCAAGGCCGAGTGGGAGAAGTCCCTCGCCGCGTGGCGCACCGCCAACCCGGAGCGCGCCGCCGAGTTCGA
CCGCATCTCCGCGGGCGAGCTGCCCGAGGGCTGGGAGGACAAGCTGCCGGTCTTCGAGGCGGGTCACTCCGTGGCCACGC
GTGCGGCCTCCGGCAAGGTCCTCCAGGCGCTCGGTGGTGTCATCCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCGGGC
TCGAACAACACCACGATCGACAAGACGTCGTCGTTCCTCCCGGTCGGCAACCCGCTGCCCGAGGCCGACCCGTACGGCCG
GACGATCCACTTCGGCATCCGCGAGCACTCCATGGCCGCGGCCATGAACGGCATCGCGCTGCACGGCAACACCCGTATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTGCGCCTGTCCGCGCTGATGCACCTCCCGGTGACG
TACGTGTGGACGCACGACTCGATCGGCCTCGGCGAGGACGGTCCGACCCACCAGCCGGTGGAGCACATCGCCTCGCTGCG
CGCCATCCCGGGCCTCAACGTCGTCCGTCCGGCCGACGCCAACGAGACGACCATCGCCTGGCGCGAGATCCTCGGGCGCG
GCAAGAAGGACTTCGGCAGGAGCGCCCCGCACGGCCTGGCGCTGACCCGCCAGGGTGTGCCCACCTACCCGGCGAACGAG
GACGCGGCCAAGGGCGGCTATGTGCTCTTCGACGCCGAGGGCGGTGAGCCCCAGGTCGTTCTGATCGGTACGGGCTCCGA
GGTCCAGCTGGCCGTCGAGGCCCGCGACGAGCTCCAGGCTGCCGGTGTGCCGACCCGTGTGGTGTCGGTGCCGTGTGTCG
AGTGGTTCGAGGAGCAGGACCAGGCGTACAAGGACAGCGTGCTGCCGCCGTCCGTGAAGGCCCGGGTCGCCGTCGAGGCG
GGCATCGGCCTGACCTGGCACCGGTACGTGGGCGACGCGGGCCGGATCGTCTCGCTGGAGCACTTCGGTGCCTCGGCCGA
CGCCAAGGTCCTCTTCCGTGAGTTCGGCTTCACCGCCGAGCACGTGGCCGCCGCCGCCCGGGAATCTCTCGCCGCCGCCG
CGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.543

97.554

0.435