Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OG596_RS28785 Genome accession   NZ_CP108654
Coordinates   6378879..6381902 (+) Length   1007 a.a.
NCBI ID   WP_405391491.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6373879..6386902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS28765 (OG596_28700) - 6373931..6375898 (+) 1968 WP_405393262.1 TerD family protein -
  OG596_RS28770 (OG596_28705) - 6376202..6377203 (+) 1002 WP_405391488.1 TerC family protein -
  OG596_RS28775 (OG596_28710) - 6377351..6378004 (-) 654 WP_405391489.1 MBL fold metallo-hydrolase -
  OG596_RS28780 (OG596_28715) - 6378015..6378704 (-) 690 WP_405391490.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG596_RS28785 (OG596_28720) uvrA 6378879..6381902 (+) 3024 WP_405391491.1 excinuclease ABC subunit UvrA Machinery gene
  OG596_RS28790 (OG596_28725) - 6382110..6382538 (+) 429 WP_405391492.1 Rieske (2Fe-2S) protein -
  OG596_RS28795 (OG596_28730) uvrC 6382724..6384826 (+) 2103 WP_405391493.1 excinuclease ABC subunit UvrC -
  OG596_RS28800 (OG596_28735) rapZ 6384823..6385782 (+) 960 WP_405391494.1 RNase adapter RapZ -
  OG596_RS28805 (OG596_28740) yvcK 6385779..6386813 (+) 1035 WP_405391495.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -

Sequence

Protein


Download         Length: 1007 a.a.        Molecular weight: 110588.95 Da        Isoelectric Point: 8.1081

>NTDB_id=664538 OG596_RS28785 WP_405391491.1 6378879..6381902(+) (uvrA) [Streptomyces sp. NBC_01102]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPISRQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLSEPPKLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLAGGMVVLDFVDL
DENDPERERMYSEHLYCPYDDLSFEEMEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEDKSLDEGAIHPWSHGHTK
EYFGRQIRALADALGFRTDIPWAGLPQRAKKALLHGHKIQTEVRYRNRYGRERAYTTPSFEGAVQFVKRRHSEAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIAEVAAMSISECAEFLGRLKLNARDKKIAERVLKEVNERLKFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKELLANEESITGQYLSGKRAIAMPDIRRPVDPKRLLTVHGARENNLQDINVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRRLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPTIARHLRTLNEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLISVL
SGLVDKGNTVIVIEHNLDVIKTADWVIDMGPEGGKGGGLVIAEGSPEYVASVPASHTGKFLQTVLGADRIGEAASVPAAR
KPARRAAAKKTVAAKAAPARSTATARTAKKAAAGKPAAKKATRTRKA

Nucleotide


Download         Length: 3024 bp        

>NTDB_id=664538 OG596_RS28785 WP_405391491.1 6378879..6381902(+) (uvrA) [Streptomyces sp. NBC_01102]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAACGTCTCGCTCGACCTCCCCCGTGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCCTCCCTCGCGTTCGACACGATCTTCGCCGAGGGCCAGCGGCGCT
ACGTGGAGTCGCTCTCCTCGTACGCCAGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATCGAAGGCCTC
TCGCCCGCTGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACCGTCGGCACGATCACCGAGGTCTACGA
CTACCTCAGGCTGCTCTTCGCCAGGATCGGCAAGCCGCACTGCCCCGAGTGCGGCAGGCCCATCTCCCGCCAGTCGCCGC
AGGCCATCGTCGACAAGGTGCTCGGCCTGCCCGAGGGCAGCCGCTTCCAGGTGCTCTCGCCGCTCGTGCGCGAGCGTAAG
GGCGAGTTCGTCGACCTCTTCGCCGATCTGCAGACCAAGGGCTACAGCAGGGCCCGGGTCGACGGCGAGACGATCCAGCT
GTCCGAGCCGCCCAAGCTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGCCTCACGGTGAAGGACAGCG
CCAAGCGCCGGCTGACCGACTCGGTGGAGACCGCGCTGGGCCTCGCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTG
GACGAGAACGACCCCGAGCGTGAGCGGATGTACTCCGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAGGAGAT
GGAGCCCCGCTCCTTCTCCTTCAACTCCCCCTTCGGCGCCTGCCCCGACTGCACGGGCATCGGCACGCGGATGGAGGTCG
ACCCGGAGCTGATCGTCCCGGACGAGGACAAGTCCCTCGACGAGGGCGCGATCCACCCCTGGTCGCACGGCCACACCAAG
GAGTACTTCGGGCGCCAGATCCGCGCGCTCGCCGACGCCCTCGGATTCCGTACGGACATCCCCTGGGCCGGACTGCCGCA
GCGCGCCAAGAAGGCGCTGCTCCACGGTCACAAGATCCAGACCGAGGTGCGCTACCGCAACAGGTACGGGCGCGAGCGCG
CCTACACGACCCCCTCCTTCGAGGGCGCGGTGCAGTTCGTCAAGAGGCGCCACTCCGAGGCCGAGAGCGACTCCAGCAGG
GAGCGCTTCGAGGGCTACATGCGCGAGGTGCCGTGCCCGACCTGTGAGGGCACCCGGCTCAAGCCGATCGTGCTCGCGGT
GACGGTGATGGAGAAGTCCATCGCCGAGGTCGCCGCGATGTCGATCAGCGAGTGCGCCGAATTCCTCGGCAGGCTCAAGC
TGAACGCCCGCGACAAGAAGATCGCCGAACGGGTGCTCAAGGAGGTCAACGAGCGGCTGAAGTTCCTCGTCGACGTGGGC
CTCGACTACCTCTCGCTGAACCGCGCCGCGGGCACGCTGTCCGGTGGCGAGGCCCAGCGCATCAGGCTCGCCACCCAGAT
CGGCTCCGGGCTCGTCGGCGTGCTGTACGTGCTGGACGAGCCGTCCATCGGCCTGCACCAGCGTGACAACCACCGGCTGA
TCGAGACCCTGGTCCGGCTCCGGGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCC
GACTGGGTCGTCGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAAGGTCGTCCACTCGGGCTCGCTCAAGGAACTGCT
GGCCAACGAGGAGTCGATCACCGGCCAGTACCTCTCCGGCAAGCGGGCGATCGCGATGCCCGACATCCGGCGCCCGGTGG
ACCCGAAGCGTCTGCTCACGGTGCACGGCGCCCGTGAGAACAACCTCCAGGACATCAACGTCTCCTTCCCGCTCGGTGTG
CTCACCGCGGTCACCGGTGTCTCCGGTTCGGGGAAGTCGACCCTGGTCAACGACATCCTGTACACCCACCTGGCGCGCGA
GCTCAACGGCGCCAAGTCGGTCCCCGGGCGGCACACCCGGGTCGACGGCGACGACCTCGTCGACAAGGTCGTTCATGTCG
ACCAGTCGCCGATCGGCCGTACGCCCCGGTCCAACCCGGCCACGTACACCGGGGTCTTCGACCACGTTCGCCGGCTGTTC
GCCGAGACGATGGAGGCGAAGGTGCGCGGCTATCTGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGGCGCTGCGAGAA
CTGCTCCGGCGACGGCACGATCAAGATCGAGATGAACTTCCTGCCCGACGTGTACGTCCCGTGCGAGGTCTGCCACGGAG
CGCGGTACAACCGGGAGACGCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTCCTGGACATGCCGATCGAGGAG
GGTCTGGAGTTCTTCGAGGCCGTCCCGACGATCGCCCGCCACCTGCGCACCCTCAACGAGGTGGGTCTCGGATACGTCAG
GCTCGGCCAGTCCGCGCCGACGCTGTCCGGCGGTGAGGCGCAGCGCGTCAAGCTGGCGAGCGAGCTGCAGAAGCGCTCCA
CCGGGCGCACGGTCTACGTGCTGGACGAGCCGACCACCGGTCTGCACTTCGAGGACATCAGCAAGCTCATCAGCGTGCTT
TCGGGCCTGGTCGACAAGGGCAACACGGTGATCGTCATCGAGCACAACCTCGATGTCATCAAGACCGCCGACTGGGTCAT
CGACATGGGCCCCGAGGGCGGCAAGGGCGGCGGCCTGGTCATCGCCGAGGGCTCCCCGGAGTATGTCGCCTCGGTGCCGG
CCAGCCACACCGGGAAGTTCCTCCAGACCGTCCTGGGCGCGGACCGGATCGGCGAGGCCGCCTCGGTGCCCGCTGCCCGC
AAGCCCGCCCGCCGGGCCGCCGCGAAGAAGACGGTCGCCGCGAAGGCAGCTCCGGCGCGCAGCACGGCCACGGCCAGGAC
CGCGAAGAAGGCGGCGGCCGGGAAGCCCGCGGCGAAGAAGGCCACCCGCACGCGGAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

UvrA interaction domain (UvrA_inter)

(131-238)

ABC transporter (ABC_tran)

(629-865)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.448

93.942

0.53
  uvrA Streptococcus pneumoniae TIGR4

56.448

93.942

0.53
  uvrA Streptococcus pneumoniae D39

56.448

93.942

0.53